Analysis of interatomic Contacts of Structural Units in PDB entry:
5ZIH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5ZIH entry

There are 4 chains in PDB entry 5ZIH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 58ALA 298
A
 GLU 300PHE 341
B
 LEU 54ALA 298
B
 GLU 300PHE 341
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 5ZIH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
78 83Right-handed 310
Helix 2
AA2
A
87 113Right-handed alpha
Helix 3
AA3
A
122 143Right-handed alpha
Helix 4
AA4
A
159 178Right-handed alpha
Helix 5
AA5
A
188 211Right-handed alpha
Helix 6
AA6
A
213 244Right-handed alpha
Helix 7
AA7
A
248 275Right-handed alpha
Helix 8
AA8
A
283 300Right-handed alpha
Helix 9
AA9
A
300 321Right-handed alpha
Helix 10
AB1
B
78 83Right-handed 310
Helix 11
AB2
B
87 113Right-handed alpha
Helix 12
AB3
B
122 143Right-handed alpha
Helix 13
AB4
B
159 179Right-handed alpha
Helix 14
AB5
B
187 211Right-handed alpha
Helix 15
AB6
B
212 243Right-handed alpha
Helix 16
AB7
B
248 266Right-handed alpha
Helix 17
AB8
B
266 275Right-handed alpha
Helix 18
AB9
B
283 299Right-handed alpha
Helix 19
AC1
B
300 321Right-handed alpha
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There are 5 sheets in PDB entry 5ZIH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 62first strand
Strand 2
A
67 71anti-parallel
Strand 3
B
67 71anti-parallel
Strand 4
B
60 62anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
150 151first strand
Strand 2
A
157 158anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
325 330first strand
Strand 2
A
335 340anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
150 151first strand
Strand 2
B
157 158anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
325 330first strand
Strand 2
B
335 340anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il