Analysis of interatomic Contacts of Structural Units in PDB entry:
5ZIT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5ZIT entry

There is 1 chain in PDB entry 5ZIT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 1PHE 457
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 5ZIT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
49 56Right-handed alpha
Helix 2
AA2
A
67 82Right-handed alpha
Helix 3
AA3
A
83 85Right-handed 310
Helix 4
AA4
A
92 99Right-handed alpha
Helix 5
AA5
A
115 119Right-handed 310
Helix 6
AA6
A
122 128Right-handed alpha
Helix 7
AA7
A
135 145Right-handed alpha
Helix 8
AA8
A
160 167Right-handed alpha
Helix 9
AA9
A
176 187Right-handed alpha
Helix 10
AB1
A
187 197Right-handed alpha
Helix 11
AB2
A
209 214Right-handed alpha
Helix 12
AB3
A
216 222Right-handed alpha
Helix 13
AB4
A
232 237Right-handed alpha
Helix 14
AB5
A
238 252Right-handed alpha
Helix 15
AB6
A
257 265Right-handed alpha
Helix 16
AB7
A
288 309Right-handed alpha
Helix 17
AB8
A
335 345Right-handed alpha
Helix 18
AB9
A
389 398Right-handed alpha
Helix 19
AC1
A
402 404Right-handed 310
Helix 20
AC2
A
405 418Right-handed alpha
Helix 21
AC3
A
421 433Right-handed alpha
Helix 22
AC4
A
434 441Right-handed 310
Helix 23
AC5
A
445 456Right-handed alpha
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There are 4 sheets in PDB entry 5ZIT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 8first strand
Strand 2
A
274 279anti-parallel
Strand 3
A
266 270anti-parallel
Strand 4
A
150 154parallel
Strand 5
A
171 174anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
22 23first strand
Strand 2
A
399 400anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
318 319first strand
Strand 2
A
326 330anti-parallel
Strand 3
A
224 231anti-parallel
Strand 4
A
349 352anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
368 369first strand
Strand 2
A
372 376anti-parallel
Strand 3
A
384 387anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il