Analysis of interatomic Contacts of Structural Units in PDB entry:
5ZIZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5ZIZ entry

There are 2 chains in PDB entry 5ZIZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 56ARG 363
B
 ARG 56ILE 362
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 5ZIZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
56 100Right-handed alpha
Helix 2
AA2
A
105 128Right-handed alpha
Helix 3
AA3
A
180 185Right-handed alpha
Helix 4
AA4
A
215 218Right-handed 310
Helix 5
AA5
A
284 297Right-handed alpha
Helix 6
AA6
A
302 334Right-handed alpha
Helix 7
AA7
A
334 343Right-handed alpha
Helix 8
AA8
A
354 363Right-handed alpha
Helix 9
AA9
B
57 100Right-handed alpha
Helix 10
AB1
B
105 128Right-handed alpha
Helix 11
AB2
B
179 185Right-handed alpha
Helix 12
AB3
B
284 296Right-handed alpha
Helix 13
AB4
B
302 343Right-handed alpha
Helix 14
AB5
B
344 348Right-handed 310
Helix 15
AB6
B
354 362Right-handed alpha
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There are 8 sheets in PDB entry 5ZIZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
148 151first strand
Strand 2
A
154 157anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
165 169first strand
Strand 2
A
172 175anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
194 198first strand
Strand 2
A
274 279anti-parallel
Strand 3
A
225 229anti-parallel
Strand 4
A
234 239anti-parallel
Strand 5
A
244 249anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
207 213first strand
Strand 2
A
261 266anti-parallel
Strand 3
A
255 258anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
148 151first strand
Strand 2
B
154 157anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
165 169first strand
Strand 2
B
172 175anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
194 198first strand
Strand 2
B
274 279anti-parallel
Strand 3
B
225 231anti-parallel
Strand 4
B
234 238anti-parallel
Strand 5
B
244 249anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
207 213first strand
Strand 2
B
261 266anti-parallel
Strand 3
B
255 258anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il