Analysis of interatomic Contacts of Structural Units in PDB entry:
5ZJ4

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5ZJ4 entry

There are 4 chains in PDB entry 5ZJ4 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 45	HIS 204
B	ALA 45	HIS 204
C	ALA 45	HIS 204
D	ALA 45	HIS 204

There are 32 helices in PDB entry 5ZJ4. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	62	66	Right-handed 310
Helix 2	AA2	A	86	94	Right-handed alpha
Helix 3	AA3	A	106	113	Right-handed alpha
Helix 4	AA4	A	125	131	Right-handed 310
Helix 5	AA5	A	149	154	Right-handed alpha
Helix 6	AA6	A	159	162	Right-handed 310
Helix 7	AA7	A	172	174	Right-handed 310
Helix 8	AA8	A	191	194	Right-handed 310
Helix 9	AA9	B	62	66	Right-handed 310
Helix 10	AB1	B	86	94	Right-handed alpha
Helix 11	AB2	B	106	113	Right-handed alpha
Helix 12	AB3	B	125	131	Right-handed 310
Helix 13	AB4	B	149	154	Right-handed alpha
Helix 14	AB5	B	159	162	Right-handed 310
Helix 15	AB6	B	172	174	Right-handed 310
Helix 16	AB7	B	191	194	Right-handed 310
Helix 17	AB8	C	62	66	Right-handed 310
Helix 18	AB9	C	86	94	Right-handed alpha
Helix 19	AC1	C	106	114	Right-handed alpha
Helix 20	AC2	C	125	131	Right-handed 310
Helix 21	AC3	C	149	154	Right-handed alpha
Helix 22	AC4	C	159	162	Right-handed 310
Helix 23	AC5	C	172	174	Right-handed 310
Helix 24	AC6	C	191	194	Right-handed 310
Helix 25	AC7	D	62	66	Right-handed 310
Helix 26	AC8	D	86	94	Right-handed alpha
Helix 27	AC9	D	106	114	Right-handed alpha
Helix 28	AD1	D	125	131	Right-handed 310
Helix 29	AD2	D	149	154	Right-handed alpha
Helix 30	AD3	D	159	162	Right-handed 310
Helix 31	AD4	D	172	174	Right-handed 310
Helix 32	AD5	D	191	194	Right-handed 310

There are 12 sheets in PDB entry 5ZJ4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	79	83	first strand
Strand 2	A	137	141	anti-parallel
Strand 3	A	176	183	anti-parallel
Strand 4	A	188	189	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	79	83	first strand
Strand 2	A	137	141	anti-parallel
Strand 3	A	176	183	anti-parallel
Strand 4	A	195	196	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	119	123	first strand
Strand 2	A	164	168	anti-parallel
Strand 3	A	147	148	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	79	83	first strand
Strand 2	B	137	141	anti-parallel
Strand 3	B	176	183	anti-parallel
Strand 4	B	188	189	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	79	83	first strand
Strand 2	B	137	141	anti-parallel
Strand 3	B	176	183	anti-parallel
Strand 4	B	195	196	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	119	123	first strand
Strand 2	B	164	168	anti-parallel
Strand 3	B	147	148	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	79	82	first strand
Strand 2	C	137	141	anti-parallel
Strand 3	C	176	183	anti-parallel
Strand 4	C	188	189	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	79	82	first strand
Strand 2	C	137	141	anti-parallel
Strand 3	C	176	183	anti-parallel
Strand 4	C	195	196	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	119	123	first strand
Strand 2	C	164	168	anti-parallel
Strand 3	C	147	148	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	79	83	first strand
Strand 2	D	137	141	anti-parallel
Strand 3	D	176	183	anti-parallel
Strand 4	D	188	189	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	79	83	first strand
Strand 2	D	137	141	anti-parallel
Strand 3	D	176	183	anti-parallel
Strand 4	D	195	196	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	119	123	first strand
Strand 2	D	164	168	anti-parallel
Strand 3	D	147	148	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5ZJ4

Analysis of interatomic Contacts of Structural Units in PDB entry:
5ZJ4