Analysis of interatomic Contacts of Structural Units in PDB entry:
5ZJ9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5ZJ9 entry

There are 4 chains in PDB entry 5ZJ9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	SER 340
B	MET 1	SER 340
C	MET 1	SER 340
D	MET 1	SER 340

There are 45 helices in PDB entry 5ZJ9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	9	24	Right-handed alpha
Helix 2	AA2	A	43	48	Right-handed alpha
Helix 3	AA3	A	61	77	Right-handed alpha
Helix 4	AA4	A	83	88	Right-handed alpha
Helix 5	AA5	A	118	123	Right-handed alpha
Helix 6	AA6	A	140	155	Right-handed alpha
Helix 7	AA7	A	166	173	Right-handed alpha
Helix 8	AA8	A	182	189	Right-handed 310
Helix 9	AA9	A	252	267	Right-handed alpha
Helix 10	AB1	A	268	273	Right-handed 310
Helix 11	AB2	A	314	337	Right-handed alpha
Helix 12	AB3	B	9	24	Right-handed alpha
Helix 13	AB4	B	43	48	Right-handed alpha
Helix 14	AB5	B	61	77	Right-handed alpha
Helix 15	AB6	B	83	88	Right-handed alpha
Helix 16	AB7	B	118	123	Right-handed alpha
Helix 17	AB8	B	140	155	Right-handed alpha
Helix 18	AB9	B	166	173	Right-handed alpha
Helix 19	AC1	B	182	189	Right-handed 310
Helix 20	AC2	B	252	267	Right-handed alpha
Helix 21	AC3	B	268	273	Right-handed 310
Helix 22	AC4	B	314	337	Right-handed alpha
Helix 23	AC5	C	9	24	Right-handed alpha
Helix 24	AC6	C	43	48	Right-handed alpha
Helix 25	AC7	C	62	77	Right-handed alpha
Helix 26	AC8	C	83	88	Right-handed alpha
Helix 27	AC9	C	118	123	Right-handed alpha
Helix 28	AD1	C	140	155	Right-handed alpha
Helix 29	AD2	C	166	173	Right-handed alpha
Helix 30	AD3	C	182	189	Right-handed 310
Helix 31	AD4	C	252	267	Right-handed alpha
Helix 32	AD5	C	268	273	Right-handed 310
Helix 33	AD6	C	311	313	Right-handed 310
Helix 34	AD7	C	314	337	Right-handed alpha
Helix 35	AD8	D	9	24	Right-handed alpha
Helix 36	AD9	D	43	48	Right-handed alpha
Helix 37	AE1	D	61	77	Right-handed alpha
Helix 38	AE2	D	83	88	Right-handed alpha
Helix 39	AE3	D	118	123	Right-handed alpha
Helix 40	AE4	D	140	155	Right-handed alpha
Helix 41	AE5	D	166	173	Right-handed alpha
Helix 42	AE6	D	182	189	Right-handed 310
Helix 43	AE7	D	252	267	Right-handed alpha
Helix 44	AE8	D	268	273	Right-handed 310
Helix 45	AE9	D	314	337	Right-handed alpha

There are 12 sheets in PDB entry 5ZJ9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	158	161	first strand
Strand 2	A	31	36	parallel
Strand 3	A	2	6	parallel
Strand 4	A	177	180	parallel
Strand 5	A	303	309	parallel
Strand 6	A	290	296	anti-parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	112	116	first strand
Strand 2	A	130	139	anti-parallel
Strand 3	A	89	98	anti-parallel
Strand 4	A	213	216	parallel
Strand 5	A	228	231	anti-parallel
Strand 6	A	236	239	anti-parallel
Strand 7	A	196	206	anti-parallel
Strand 8	A	243	244	anti-parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	112	116	first strand
Strand 2	A	130	139	anti-parallel
Strand 3	A	89	98	anti-parallel
Strand 4	A	213	216	parallel
Strand 5	A	228	231	anti-parallel
Strand 6	A	236	239	anti-parallel
Strand 7	A	196	206	anti-parallel
Strand 8	A	274	285	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	158	161	first strand
Strand 2	B	31	36	parallel
Strand 3	B	2	6	parallel
Strand 4	B	177	180	parallel
Strand 5	B	303	309	parallel
Strand 6	B	290	296	anti-parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	112	116	first strand
Strand 2	B	130	139	anti-parallel
Strand 3	B	89	98	anti-parallel
Strand 4	B	213	216	parallel
Strand 5	B	228	231	anti-parallel
Strand 6	B	236	239	anti-parallel
Strand 7	B	196	206	anti-parallel
Strand 8	B	243	244	anti-parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	112	116	first strand
Strand 2	B	130	139	anti-parallel
Strand 3	B	89	98	anti-parallel
Strand 4	B	213	216	parallel
Strand 5	B	228	231	anti-parallel
Strand 6	B	236	239	anti-parallel
Strand 7	B	196	206	anti-parallel
Strand 8	B	274	285	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	158	161	first strand
Strand 2	C	31	36	parallel
Strand 3	C	2	6	parallel
Strand 4	C	177	180	parallel
Strand 5	C	303	309	parallel
Strand 6	C	290	296	anti-parallel

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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	112	116	first strand
Strand 2	C	130	139	anti-parallel
Strand 3	C	89	98	anti-parallel
Strand 4	C	212	216	parallel
Strand 5	C	228	231	anti-parallel
Strand 6	C	236	239	anti-parallel
Strand 7	C	196	206	anti-parallel
Strand 8	C	243	244	anti-parallel

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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	112	116	first strand
Strand 2	C	130	139	anti-parallel
Strand 3	C	89	98	anti-parallel
Strand 4	C	212	216	parallel
Strand 5	C	228	231	anti-parallel
Strand 6	C	236	239	anti-parallel
Strand 7	C	196	206	anti-parallel
Strand 8	C	274	285	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	158	161	first strand
Strand 2	D	31	36	parallel
Strand 3	D	2	6	parallel
Strand 4	D	177	180	parallel
Strand 5	D	302	309	parallel
Strand 6	D	290	297	anti-parallel

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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	112	116	first strand
Strand 2	D	130	139	anti-parallel
Strand 3	D	89	98	anti-parallel
Strand 4	D	213	216	parallel
Strand 5	D	228	231	anti-parallel
Strand 6	D	236	239	anti-parallel
Strand 7	D	196	206	anti-parallel
Strand 8	D	243	244	anti-parallel

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There are 8 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	112	116	first strand
Strand 2	D	130	139	anti-parallel
Strand 3	D	89	98	anti-parallel
Strand 4	D	213	216	parallel
Strand 5	D	228	231	anti-parallel
Strand 6	D	236	239	anti-parallel
Strand 7	D	196	206	anti-parallel
Strand 8	D	274	285	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5ZJ9

Analysis of interatomic Contacts of Structural Units in PDB entry:
5ZJ9