Analysis of interatomic Contacts of Structural Units in PDB entry:
5ZJI

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5ZJI entry

Note, this PDB entry contains modified residue(s) PHOSPHOTHREONINE (TPO) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 22 chains in PDB entry 5ZJI (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
1	GLU 48	ILE 243
2	ASP 62	THR 268
3	ARG 47	HIS 267
4	LYS 54	GLY 252
A	GLU 9	GLY 750
B	GLU 2	GLY 734
C	MET 1	TYR 81
D	GLY 58	ASP 199
E	LYS 69	LYS 136
F	ASP 67	TYR 224
G	LEU 49	PHE 145
H	LYS 48	ILE 142
I	THR 2	LYS 34
J	MET 1	PHE 41
K	TYR 47	ASP 130
L	GLN 45	PHE 210
O	THR 36	LYS 127
N	VAL 62	TRP 145
X	SER 14	GLY 231
Y	ARG 1	ARG 2
Y	VAL 4	ASN 228
Z	SER 14	GLY 231

There are165 helices in PDB entry 5ZJI. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	1	77	99	Right-handed alpha
Helix 2	AA2	1	99	108	Right-handed alpha
Helix 3	AA3	1	138	158	Right-handed alpha
Helix 4	AA4	1	162	168	Right-handed alpha
Helix 5	AA5	1	170	174	Right-handed 310
Helix 6	AA6	1	181	213	Right-handed alpha
Helix 7	AA7	1	217	228	Right-handed alpha
Helix 8	AA8	1	229	233	Right-handed 310
Helix 9	AA9	1	234	239	Right-handed alpha
Helix 10	AB1	2	96	131	Right-handed alpha
Helix 11	AB2	2	138	142	Right-handed 310
Helix 12	AB3	2	150	174	Right-handed alpha
Helix 13	AB4	2	198	203	Right-handed alpha
Helix 14	AB5	2	211	243	Right-handed alpha
Helix 15	AB6	2	246	257	Right-handed alpha
Helix 16	AB7	2	262	268	Right-handed 310
Helix 17	AB8	3	53	58	Right-handed alpha
Helix 18	AB9	3	86	108	Right-handed alpha
Helix 19	AC1	3	109	117	Right-handed alpha
Helix 20	AC2	3	121	125	Right-handed 310
Helix 21	AC3	3	145	170	Right-handed alpha
Helix 22	AC4	3	181	186	Right-handed 310
Helix 23	AC5	3	209	241	Right-handed alpha
Helix 24	AC6	3	243	254	Right-handed alpha
Helix 25	AC7	4	85	119	Right-handed alpha
Helix 26	AC8	4	138	163	Right-handed alpha
Helix 27	AC9	4	198	225	Right-handed alpha
Helix 28	AD1	4	229	240	Right-handed alpha
Helix 29	AD2	A	43	52	Right-handed alpha
Helix 30	AD3	A	62	95	Right-handed alpha
Helix 31	AD4	A	97	104	Right-handed alpha
Helix 32	AD5	A	120	125	Right-handed 310
Helix 33	AD6	A	140	148	Right-handed alpha
Helix 34	AD7	A	152	177	Right-handed alpha
Helix 35	AD8	A	184	190	Right-handed alpha
Helix 36	AD9	A	190	201	Right-handed alpha
Helix 37	AE1	A	202	217	Right-handed alpha
Helix 38	AE2	A	217	228	Right-handed alpha
Helix 39	AE3	A	230	234	Right-handed 310
Helix 40	AE4	A	236	242	Right-handed alpha
Helix 41	AE5	A	243	251	Right-handed alpha
Helix 42	AE6	A	252	256	Right-handed 310
Helix 43	AE7	A	258	263	Right-handed alpha
Helix 44	AE8	A	265	272	Right-handed 310
Helix 45	AE9	A	287	306	Right-handed alpha
Helix 46	AF1	A	318	326	Right-handed alpha
Helix 47	AF2	A	337	342	Right-handed alpha
Helix 48	AF3	A	345	370	Right-handed alpha
Helix 49	AF4	A	380	412	Right-handed alpha
Helix 50	AF5	A	422	430	Right-handed alpha
Helix 51	AF6	A	430	462	Right-handed alpha
Helix 52	AF7	A	464	468	Right-handed 310
Helix 53	AF8	A	478	490	Right-handed alpha
Helix 54	AF9	A	527	554	Right-handed alpha
Helix 55	AG1	A	563	567	Right-handed 310
Helix 56	AG2	A	585	616	Right-handed alpha
Helix 57	AG3	A	633	638	Right-handed alpha
Helix 58	AG4	A	640	647	Right-handed alpha
Helix 59	AG5	A	653	658	Right-handed alpha
Helix 60	AG6	A	664	681	Right-handed alpha
Helix 61	AG7	A	681	687	Right-handed alpha
Helix 62	AG8	A	688	705	Right-handed alpha
Helix 63	AG9	A	718	749	Right-handed alpha
Helix 64	AH1	B	9	14	Right-handed alpha
Helix 65	AH2	B	18	27	Right-handed alpha
Helix 66	AH3	B	38	70	Right-handed alpha
Helix 67	AH4	B	73	80	Right-handed alpha
Helix 68	AH5	B	81	84	Right-handed 310
Helix 69	AH6	B	97	104	Right-handed alpha
Helix 70	AH7	B	119	127	Right-handed alpha
Helix 71	AH8	B	131	156	Right-handed alpha
Helix 72	AH9	B	164	169	Right-handed alpha
Helix 73	AI1	B	170	197	Right-handed alpha
Helix 74	AI2	B	197	203	Right-handed alpha
Helix 75	AI3	B	222	228	Right-handed alpha
Helix 76	AI4	B	229	235	Right-handed 310
Helix 77	AI5	B	269	288	Right-handed alpha
Helix 78	AI6	B	300	308	Right-handed alpha
Helix 79	AI7	B	322	327	Right-handed alpha
Helix 80	AI8	B	330	353	Right-handed alpha
Helix 81	AI9	B	365	396	Right-handed alpha
Helix 82	AJ1	B	406	414	Right-handed alpha
Helix 83	AJ2	B	414	446	Right-handed alpha
Helix 84	AJ3	B	448	452	Right-handed 310
Helix 85	AJ4	B	457	466	Right-handed alpha
Helix 86	AJ5	B	483	489	Right-handed alpha
Helix 87	AJ6	B	493	502	Right-handed alpha
Helix 88	AJ7	B	513	540	Right-handed alpha
Helix 89	AJ8	B	549	554	Right-handed 310
Helix 90	AJ9	B	571	604	Right-handed alpha
Helix 91	AK1	B	605	613	Right-handed alpha
Helix 92	AK2	B	615	622	Right-handed alpha
Helix 93	AK3	B	631	633	Right-handed 310
Helix 94	AK4	B	643	666	Right-handed alpha
Helix 95	AK5	B	669	685	Right-handed alpha
Helix 96	AK6	B	701	731	Right-handed alpha
Helix 97	AK7	C	15	21	Right-handed alpha
Helix 98	AK8	C	44	48	Right-handed 310
Helix 99	AK9	D	81	87	Right-handed alpha
Helix 100	AL1	D	123	138	Right-handed alpha
Helix 101	AL2	D	180	184	Right-handed 310
Helix 102	AL3	E	128	130	Right-handed 310
Helix 103	AL4	F	67	71	Right-handed 310
Helix 104	AL5	F	77	96	Right-handed alpha
Helix 105	AL6	F	102	123	Right-handed alpha
Helix 106	AL7	F	142	146	Right-handed 310
Helix 107	AL8	F	149	176	Right-handed alpha
Helix 108	AL9	F	181	186	Right-handed alpha
Helix 109	AM1	F	188	196	Right-handed alpha
Helix 110	AM2	F	197	200	Right-handed 310
Helix 111	AM3	F	201	212	Right-handed alpha
Helix 112	AM4	G	50	69	Right-handed alpha
Helix 113	AM5	G	70	81	Right-handed alpha
Helix 114	AM6	G	89	94	Right-handed alpha
Helix 115	AM7	G	101	106	Right-handed alpha
Helix 116	AM8	G	114	136	Right-handed alpha
Helix 117	AM9	H	60	65	Right-handed alpha
Helix 118	AN1	H	80	91	Right-handed alpha
Helix 119	AN2	H	96	118	Right-handed alpha
Helix 120	AN3	I	6	16	Right-handed alpha
Helix 121	AN4	I	16	31	Right-handed alpha
Helix 122	AN5	J	2	9	Right-handed alpha
Helix 123	AN6	J	10	33	Right-handed alpha
Helix 124	AN7	K	50	69	Right-handed alpha
Helix 125	AN8	K	101	121	Right-handed alpha
Helix 126	AN9	L	58	60	Right-handed 310
Helix 127	AO1	L	73	81	Right-handed alpha
Helix 128	AO2	L	91	108	Right-handed alpha
Helix 129	AO3	L	108	115	Right-handed alpha
Helix 130	AO4	L	122	150	Right-handed alpha
Helix 131	AO5	L	175	203	Right-handed alpha
Helix 132	AO6	O	47	58	Right-handed alpha
Helix 133	AO7	O	61	65	Right-handed 310
Helix 134	AO8	O	95	118	Right-handed alpha
Helix 135	AO9	N	64	73	Right-handed alpha
Helix 136	AP1	N	73	91	Right-handed alpha
Helix 137	AP2	N	118	128	Right-handed alpha
Helix 138	AP3	X	25	29	Right-handed 310
Helix 139	AP4	X	54	88	Right-handed alpha
Helix 140	AP5	X	96	100	Right-handed 310
Helix 141	AP6	X	101	106	Right-handed 310
Helix 142	AP7	X	111	115	Right-handed 310
Helix 143	AP8	X	123	145	Right-handed alpha
Helix 144	AP9	X	158	162	Right-handed 310
Helix 145	AQ1	X	169	202	Right-handed alpha
Helix 146	AQ2	X	204	215	Right-handed alpha
Helix 147	AQ3	X	220	225	Right-handed 310
Helix 148	AQ4	Y	21	25	Right-handed 310
Helix 149	AQ5	Y	50	83	Right-handed alpha
Helix 150	AQ6	Y	96	102	Right-handed 310
Helix 151	AQ7	Y	107	111	Right-handed 310
Helix 152	AQ8	Y	119	140	Right-handed alpha
Helix 153	AQ9	Y	154	158	Right-handed 310
Helix 154	AR1	Y	165	197	Right-handed alpha
Helix 155	AR2	Y	200	211	Right-handed alpha
Helix 156	AR3	Y	217	221	Right-handed 310
Helix 157	AR4	Z	25	29	Right-handed 310
Helix 158	AR5	Z	54	88	Right-handed alpha
Helix 159	AR6	Z	96	106	Right-handed 310
Helix 160	AR7	Z	111	115	Right-handed 310
Helix 161	AR8	Z	123	145	Right-handed alpha
Helix 162	AR9	Z	158	162	Right-handed 310
Helix 163	AS1	Z	169	202	Right-handed alpha
Helix 164	AS2	Z	204	215	Right-handed alpha
Helix 165	AS3	Z	222	226	Right-handed 310

There are 11 sheets in PDB entry 5ZJI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	111	113	first strand
Strand 2	A	133	136	anti-parallel
Strand 3	A	126	127	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	513	515	first strand
Strand 2	A	518	521	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	89	90	first strand
Strand 2	B	113	114	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	454	455	first strand
Strand 2	F	135	137	parallel
Strand 3	F	128	129	anti-parallel
Strand 4	F	72	73	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	635	636	first strand
Strand 2	B	639	640	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	65	68	first strand
Strand 2	C	4	8	anti-parallel
Strand 3	D	176	177	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	27	30	first strand
Strand 2	C	38	41	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	115	121	first strand
Strand 2	D	90	96	anti-parallel
Strand 3	D	142	147	anti-parallel
Strand 4	D	153	155	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	101	103	first strand
Strand 2	D	109	111	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	124	127	first strand
Strand 2	E	110	113	anti-parallel
Strand 3	E	94	100	anti-parallel
Strand 4	E	80	83	anti-parallel
Strand 5	E	132	134	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	55	56	first strand
Strand 2	L	66	67	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5ZJI

Analysis of interatomic Contacts of Structural Units in PDB entry:
5ZJI