Analysis of interatomic Contacts of Structural Units in PDB entry:
5ZJK

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5ZJK entry

There are 18 chains in PDB entry 5ZJK (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 38	ARG 241
B	GLY 38	LEU 243
C	GLY 38	ASN 242
D	GLY 38	ASN 242
E	GLY 38	ASN 242
F	GLY 38	ARG 241
G	GLY 38	ARG 241
H	GLY 38	ARG 241
I	GLY 38	ARG 241
J	GLY 38	GLU 244
K	GLY 38	LEU 243
L	GLY 38	ARG 241
M	GLY 38	ASN 242
N	GLY 38	ARG 241
O	GLY 38	ARG 241
P	GLY 38	ARG 241
Q	GLY 38	ARG 241
R	GLY 38	ARG 241

There are177 helices in PDB entry 5ZJK. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	43	45	Right-handed 310
Helix 2	AA2	A	60	72	Right-handed alpha
Helix 3	AA3	A	73	77	Right-handed 310
Helix 4	AA4	A	106	113	Right-handed 310
Helix 5	AA5	A	130	145	Right-handed alpha
Helix 6	AA6	A	150	154	Right-handed 310
Helix 7	AA7	A	162	172	Right-handed alpha
Helix 8	AA8	A	178	186	Right-handed alpha
Helix 9	AA9	A	211	215	Right-handed 310
Helix 10	AB1	A	228	239	Right-handed alpha
Helix 11	AB2	B	43	45	Right-handed 310
Helix 12	AB3	B	60	72	Right-handed alpha
Helix 13	AB4	B	73	77	Right-handed 310
Helix 14	AB5	B	106	113	Right-handed 310
Helix 15	AB6	B	130	146	Right-handed alpha
Helix 16	AB7	B	150	154	Right-handed 310
Helix 17	AB8	B	162	172	Right-handed alpha
Helix 18	AB9	B	178	186	Right-handed alpha
Helix 19	AC1	B	211	215	Right-handed 310
Helix 20	AC2	B	228	239	Right-handed alpha
Helix 21	AC3	C	43	45	Right-handed 310
Helix 22	AC4	C	60	72	Right-handed alpha
Helix 23	AC5	C	73	77	Right-handed 310
Helix 24	AC6	C	106	113	Right-handed 310
Helix 25	AC7	C	130	145	Right-handed alpha
Helix 26	AC8	C	150	154	Right-handed 310
Helix 27	AC9	C	162	171	Right-handed alpha
Helix 28	AD1	C	178	186	Right-handed alpha
Helix 29	AD2	C	211	215	Right-handed 310
Helix 30	AD3	C	228	239	Right-handed alpha
Helix 31	AD4	D	43	45	Right-handed 310
Helix 32	AD5	D	60	72	Right-handed alpha
Helix 33	AD6	D	73	77	Right-handed 310
Helix 34	AD7	D	106	112	Right-handed 310
Helix 35	AD8	D	130	146	Right-handed alpha
Helix 36	AD9	D	150	154	Right-handed 310
Helix 37	AE1	D	162	171	Right-handed alpha
Helix 38	AE2	D	178	186	Right-handed alpha
Helix 39	AE3	D	228	239	Right-handed alpha
Helix 40	AE4	E	43	45	Right-handed 310
Helix 41	AE5	E	60	72	Right-handed alpha
Helix 42	AE6	E	73	77	Right-handed 310
Helix 43	AE7	E	106	112	Right-handed 310
Helix 44	AE8	E	130	146	Right-handed alpha
Helix 45	AE9	E	150	154	Right-handed 310
Helix 46	AF1	E	162	171	Right-handed alpha
Helix 47	AF2	E	178	186	Right-handed alpha
Helix 48	AF3	E	211	215	Right-handed 310
Helix 49	AF4	E	228	239	Right-handed alpha
Helix 50	AF5	F	43	45	Right-handed 310
Helix 51	AF6	F	60	72	Right-handed alpha
Helix 52	AF7	F	73	77	Right-handed 310
Helix 53	AF8	F	106	113	Right-handed 310
Helix 54	AF9	F	130	146	Right-handed alpha
Helix 55	AG1	F	150	154	Right-handed 310
Helix 56	AG2	F	162	171	Right-handed alpha
Helix 57	AG3	F	178	186	Right-handed alpha
Helix 58	AG4	F	211	215	Right-handed 310
Helix 59	AG5	F	228	239	Right-handed alpha
Helix 60	AG6	G	43	45	Right-handed 310
Helix 61	AG7	G	60	72	Right-handed alpha
Helix 62	AG8	G	73	77	Right-handed 310
Helix 63	AG9	G	106	113	Right-handed 310
Helix 64	AH1	G	130	146	Right-handed alpha
Helix 65	AH2	G	150	154	Right-handed 310
Helix 66	AH3	G	162	171	Right-handed alpha
Helix 67	AH4	G	178	186	Right-handed alpha
Helix 68	AH5	G	228	239	Right-handed alpha
Helix 69	AH6	H	43	45	Right-handed 310
Helix 70	AH7	H	60	72	Right-handed alpha
Helix 71	AH8	H	73	77	Right-handed 310
Helix 72	AH9	H	106	113	Right-handed 310
Helix 73	AI1	H	130	145	Right-handed alpha
Helix 74	AI2	H	150	154	Right-handed 310
Helix 75	AI3	H	162	171	Right-handed alpha
Helix 76	AI4	H	178	186	Right-handed alpha
Helix 77	AI5	H	191	193	Right-handed 310
Helix 78	AI6	H	211	215	Right-handed 310
Helix 79	AI7	H	228	239	Right-handed alpha
Helix 80	AI8	I	43	45	Right-handed 310
Helix 81	AI9	I	60	72	Right-handed alpha
Helix 82	AJ1	I	73	77	Right-handed 310
Helix 83	AJ2	I	106	113	Right-handed 310
Helix 84	AJ3	I	130	146	Right-handed alpha
Helix 85	AJ4	I	150	154	Right-handed 310
Helix 86	AJ5	I	162	171	Right-handed alpha
Helix 87	AJ6	I	178	186	Right-handed alpha
Helix 88	AJ7	I	228	239	Right-handed alpha
Helix 89	AJ8	J	43	45	Right-handed 310
Helix 90	AJ9	J	60	72	Right-handed alpha
Helix 91	AK1	J	73	77	Right-handed 310
Helix 92	AK2	J	106	112	Right-handed 310
Helix 93	AK3	J	130	146	Right-handed alpha
Helix 94	AK4	J	150	154	Right-handed 310
Helix 95	AK5	J	162	171	Right-handed alpha
Helix 96	AK6	J	178	186	Right-handed alpha
Helix 97	AK7	J	211	215	Right-handed 310
Helix 98	AK8	J	228	239	Right-handed alpha
Helix 99	AK9	K	43	45	Right-handed 310
Helix 100	AL1	K	60	72	Right-handed alpha
Helix 101	AL2	K	73	77	Right-handed 310
Helix 102	AL3	K	106	112	Right-handed 310
Helix 103	AL4	K	130	146	Right-handed alpha
Helix 104	AL5	K	150	154	Right-handed 310
Helix 105	AL6	K	162	171	Right-handed alpha
Helix 106	AL7	K	178	186	Right-handed alpha
Helix 107	AL8	K	211	215	Right-handed 310
Helix 108	AL9	K	228	239	Right-handed alpha
Helix 109	AM1	L	43	45	Right-handed 310
Helix 110	AM2	L	60	72	Right-handed alpha
Helix 111	AM3	L	73	77	Right-handed 310
Helix 112	AM4	L	106	111	Right-handed 310
Helix 113	AM5	L	130	146	Right-handed alpha
Helix 114	AM6	L	150	154	Right-handed 310
Helix 115	AM7	L	162	172	Right-handed alpha
Helix 116	AM8	L	178	186	Right-handed alpha
Helix 117	AM9	L	228	239	Right-handed alpha
Helix 118	AN1	M	62	72	Right-handed alpha
Helix 119	AN2	M	73	77	Right-handed 310
Helix 120	AN3	M	106	113	Right-handed 310
Helix 121	AN4	M	130	146	Right-handed alpha
Helix 122	AN5	M	150	154	Right-handed 310
Helix 123	AN6	M	162	171	Right-handed alpha
Helix 124	AN7	M	178	186	Right-handed alpha
Helix 125	AN8	M	211	215	Right-handed 310
Helix 126	AN9	M	228	239	Right-handed alpha
Helix 127	AO1	N	43	45	Right-handed 310
Helix 128	AO2	N	60	72	Right-handed alpha
Helix 129	AO3	N	73	78	Right-handed alpha
Helix 130	AO4	N	106	112	Right-handed 310
Helix 131	AO5	N	130	147	Right-handed alpha
Helix 132	AO6	N	150	154	Right-handed 310
Helix 133	AO7	N	162	172	Right-handed alpha
Helix 134	AO8	N	178	186	Right-handed alpha
Helix 135	AO9	N	191	193	Right-handed 310
Helix 136	AP1	N	211	215	Right-handed 310
Helix 137	AP2	N	228	239	Right-handed alpha
Helix 138	AP3	O	43	45	Right-handed 310
Helix 139	AP4	O	60	72	Right-handed alpha
Helix 140	AP5	O	73	77	Right-handed 310
Helix 141	AP6	O	106	113	Right-handed 310
Helix 142	AP7	O	130	146	Right-handed alpha
Helix 143	AP8	O	150	154	Right-handed 310
Helix 144	AP9	O	162	171	Right-handed alpha
Helix 145	AQ1	O	178	186	Right-handed alpha
Helix 146	AQ2	O	228	239	Right-handed alpha
Helix 147	AQ3	P	43	45	Right-handed 310
Helix 148	AQ4	P	60	72	Right-handed alpha
Helix 149	AQ5	P	73	77	Right-handed 310
Helix 150	AQ6	P	106	113	Right-handed 310
Helix 151	AQ7	P	130	146	Right-handed alpha
Helix 152	AQ8	P	150	154	Right-handed 310
Helix 153	AQ9	P	162	172	Right-handed alpha
Helix 154	AR1	P	178	186	Right-handed alpha
Helix 155	AR2	P	211	215	Right-handed 310
Helix 156	AR3	P	228	239	Right-handed alpha
Helix 157	AR4	Q	43	45	Right-handed 310
Helix 158	AR5	Q	60	72	Right-handed alpha
Helix 159	AR6	Q	73	78	Right-handed 310
Helix 160	AR7	Q	106	113	Right-handed 310
Helix 161	AR8	Q	130	146	Right-handed alpha
Helix 162	AR9	Q	150	154	Right-handed 310
Helix 163	AS1	Q	162	172	Right-handed alpha
Helix 164	AS2	Q	178	186	Right-handed alpha
Helix 165	AS3	Q	191	193	Right-handed 310
Helix 166	AS4	Q	211	215	Right-handed 310
Helix 167	AS5	Q	228	239	Right-handed alpha
Helix 168	AS6	R	43	45	Right-handed 310
Helix 169	AS7	R	60	70	Right-handed alpha
Helix 170	AS8	R	73	78	Right-handed alpha
Helix 171	AS9	R	106	113	Right-handed 310
Helix 172	AT1	R	130	145	Right-handed alpha
Helix 173	AT2	R	150	154	Right-handed 310
Helix 174	AT3	R	162	171	Right-handed alpha
Helix 175	AT4	R	178	186	Right-handed alpha
Helix 176	AT5	R	211	215	Right-handed 310
Helix 177	AT6	R	228	237	Right-handed alpha

There are 36 sheets in PDB entry 5ZJK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	39	41	first strand
Strand 2	A	195	197	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	81	85	first strand
Strand 2	A	51	57	parallel
Strand 3	A	92	95	parallel
Strand 4	A	120	121	parallel
Strand 5	A	103	104	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	39	41	first strand
Strand 2	B	195	197	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	81	84	first strand
Strand 2	B	51	56	parallel
Strand 3	B	92	95	parallel
Strand 4	B	120	121	parallel
Strand 5	B	103	104	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	39	41	first strand
Strand 2	C	195	197	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	81	84	first strand
Strand 2	C	51	57	parallel
Strand 3	C	92	95	parallel
Strand 4	C	120	121	parallel
Strand 5	C	103	104	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	39	41	first strand
Strand 2	D	195	197	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	81	84	first strand
Strand 2	D	51	57	parallel
Strand 3	D	92	95	parallel
Strand 4	D	120	121	parallel
Strand 5	D	103	104	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	39	41	first strand
Strand 2	E	195	197	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	81	84	first strand
Strand 2	E	51	57	parallel
Strand 3	E	92	95	parallel
Strand 4	E	120	121	parallel
Strand 5	E	103	104	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	39	41	first strand
Strand 2	F	195	197	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	81	85	first strand
Strand 2	F	51	56	parallel
Strand 3	F	92	95	parallel
Strand 4	F	120	121	parallel
Strand 5	F	103	104	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	39	41	first strand
Strand 2	G	195	197	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	81	84	first strand
Strand 2	G	51	56	parallel
Strand 3	G	92	95	parallel
Strand 4	G	120	121	parallel
Strand 5	G	103	104	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	39	41	first strand
Strand 2	H	195	197	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	81	85	first strand
Strand 2	H	51	57	parallel
Strand 3	H	92	95	parallel
Strand 4	H	120	121	parallel
Strand 5	H	103	104	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	39	41	first strand
Strand 2	I	195	197	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	81	84	first strand
Strand 2	I	51	57	parallel
Strand 3	I	92	95	parallel
Strand 4	I	120	121	parallel
Strand 5	I	103	104	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	39	41	first strand
Strand 2	J	195	197	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	81	84	first strand
Strand 2	J	51	57	parallel
Strand 3	J	92	95	parallel
Strand 4	J	120	121	parallel
Strand 5	J	103	104	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	39	41	first strand
Strand 2	K	195	197	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	81	84	first strand
Strand 2	K	51	56	parallel
Strand 3	K	92	95	parallel
Strand 4	K	120	121	parallel
Strand 5	K	103	104	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	39	41	first strand
Strand 2	L	195	197	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	81	85	first strand
Strand 2	L	51	57	parallel
Strand 3	L	92	95	parallel
Strand 4	L	120	121	parallel
Strand 5	L	103	104	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	39	41	first strand
Strand 2	M	195	197	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	81	84	first strand
Strand 2	M	51	56	parallel
Strand 3	M	92	95	parallel
Strand 4	M	120	121	parallel
Strand 5	M	103	104	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	39	41	first strand
Strand 2	N	195	197	anti-parallel

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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	80	84	first strand
Strand 2	N	50	56	parallel
Strand 3	N	92	95	parallel
Strand 4	N	120	121	parallel
Strand 5	N	103	104	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	39	41	first strand
Strand 2	O	195	197	anti-parallel

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There are 5 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	81	85	first strand
Strand 2	O	51	57	parallel
Strand 3	O	92	95	parallel
Strand 4	O	120	121	parallel
Strand 5	O	103	104	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	39	41	first strand
Strand 2	P	195	197	anti-parallel

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There are 5 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	81	84	first strand
Strand 2	P	51	57	parallel
Strand 3	P	92	95	parallel
Strand 4	P	120	121	parallel
Strand 5	P	103	104	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	39	41	first strand
Strand 2	Q	195	197	anti-parallel

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There are 5 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	81	84	first strand
Strand 2	Q	51	56	parallel
Strand 3	Q	92	95	parallel
Strand 4	Q	120	121	parallel
Strand 5	Q	103	104	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	39	41	first strand
Strand 2	R	195	197	anti-parallel

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There are 5 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	81	84	first strand
Strand 2	R	51	57	parallel
Strand 3	R	92	95	parallel
Strand 4	R	120	121	parallel
Strand 5	R	103	104	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5ZJK

Analysis of interatomic Contacts of Structural Units in PDB entry:
5ZJK