Analysis of interatomic Contacts of Structural Units in PDB entry:
5ZJM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5ZJM entry

There are 4 chains in PDB entry 5ZJM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 0LYS 289
B
 GLY -1LYS 289
C
 PHE 0LYS 289
D
 GLY -1LYS 289
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 52 helices in PDB entry 5ZJM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
19 33Right-handed alpha
Helix 2
AA2
A
47 51Right-handed 310
Helix 3
AA3
A
52 68Right-handed alpha
Helix 4
AA4
A
81 96Right-handed alpha
Helix 5
AA5
A
111 127Right-handed alpha
Helix 6
AA6
A
144 153Right-handed alpha
Helix 7
AA7
A
166 177Right-handed alpha
Helix 8
AA8
A
186 188Right-handed 310
Helix 9
AA9
A
189 196Right-handed alpha
Helix 10
AB1
A
205 222Right-handed alpha
Helix 11
AB2
A
224 246Right-handed alpha
Helix 12
AB3
A
246 258Right-handed alpha
Helix 13
AB4
A
273 288Right-handed alpha
Helix 14
AB5
B
19 33Right-handed alpha
Helix 15
AB6
B
47 51Right-handed 310
Helix 16
AB7
B
52 68Right-handed alpha
Helix 17
AB8
B
81 96Right-handed alpha
Helix 18
AB9
B
111 127Right-handed alpha
Helix 19
AC1
B
144 152Right-handed alpha
Helix 20
AC2
B
166 177Right-handed alpha
Helix 21
AC3
B
186 188Right-handed 310
Helix 22
AC4
B
189 196Right-handed alpha
Helix 23
AC5
B
205 222Right-handed alpha
Helix 24
AC6
B
224 246Right-handed alpha
Helix 25
AC7
B
246 258Right-handed alpha
Helix 26
AC8
B
273 288Right-handed alpha
Helix 27
AC9
C
19 33Right-handed alpha
Helix 28
AD1
C
47 51Right-handed 310
Helix 29
AD2
C
52 68Right-handed alpha
Helix 30
AD3
C
81 96Right-handed alpha
Helix 31
AD4
C
111 127Right-handed alpha
Helix 32
AD5
C
144 153Right-handed alpha
Helix 33
AD6
C
166 177Right-handed alpha
Helix 34
AD7
C
186 188Right-handed 310
Helix 35
AD8
C
189 196Right-handed alpha
Helix 36
AD9
C
205 222Right-handed alpha
Helix 37
AE1
C
224 246Right-handed alpha
Helix 38
AE2
C
246 258Right-handed alpha
Helix 39
AE3
C
273 288Right-handed alpha
Helix 40
AE4
D
19 33Right-handed alpha
Helix 41
AE5
D
47 51Right-handed 310
Helix 42
AE6
D
52 68Right-handed alpha
Helix 43
AE7
D
81 96Right-handed alpha
Helix 44
AE8
D
111 127Right-handed alpha
Helix 45
AE9
D
144 153Right-handed alpha
Helix 46
AF1
D
166 177Right-handed alpha
Helix 47
AF2
D
186 188Right-handed 310
Helix 48
AF3
D
189 196Right-handed alpha
Helix 49
AF4
D
205 221Right-handed alpha
Helix 50
AF5
D
224 246Right-handed alpha
Helix 51
AF6
D
246 258Right-handed alpha
Helix 52
AF7
D
273 288Right-handed alpha
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There are 4 sheets in PDB entry 5ZJM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 7first strand
Strand 2
A
38 41parallel
Strand 3
A
72 76parallel
Strand 4
A
100 101parallel
Strand 5
A
130 133parallel
Strand 6
A
157 162parallel
Strand 7
A
181 184parallel
Strand 8
A
200 203parallel
Strand 9
A
3 7parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 7first strand
Strand 2
B
38 41parallel
Strand 3
B
72 76parallel
Strand 4
B
99 101parallel
Strand 5
B
129 133parallel
Strand 6
B
157 162parallel
Strand 7
B
181 184parallel
Strand 8
B
200 203parallel
Strand 9
B
3 7parallel
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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
3 7first strand
Strand 2
C
38 41parallel
Strand 3
C
72 76parallel
Strand 4
C
99 101parallel
Strand 5
C
129 133parallel
Strand 6
C
157 162parallel
Strand 7
C
181 184parallel
Strand 8
C
200 203parallel
Strand 9
C
3 7parallel
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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
3 7first strand
Strand 2
D
38 41parallel
Strand 3
D
72 76parallel
Strand 4
D
100 101parallel
Strand 5
D
130 133parallel
Strand 6
D
157 162parallel
Strand 7
D
181 184parallel
Strand 8
D
200 203parallel
Strand 9
D
3 7parallel
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