Analysis of interatomic
Contacts of Structural
Units in PDB entry:
Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332).
This page provides analyses of
contacts formed by:
For analysis of ligand-protein contacts, use:
3D structure can be seen in additional window with
STING software for 5ZJT entry
There are 7 chains in PDB entry 5ZJT
(CSU analysis of residue contacts immediately below table)
| Chain ID |
Initial residue | Terminal residue |
|---|
A
|
LEU 10 | ASN 77 |
B
|
ARG 3 | TYR 74 |
C
|
G 1 | C 14 |
D
|
G 1 | C 14 |
E
|
LYS 21 | SER 78 |
G
|
G -1 | C 12 |
H
|
G 3 | C 16 |
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There are 11
helices in PDB entry 5ZJT. Click on helix of interest for
CSU analysis.
Helix
number
| Helix
ID | Chain
ID |
Initial
residue | Terminal
residue |
Helix class |
|---|
| Helix 1 |
AA1 | A
| 11 |
15 | Right-handed 310 |
| Helix 2 |
AA2 | A
| 27 |
41 | Right-handed alpha |
| Helix 3 |
AA3 | A
| 45 |
56 | Right-handed alpha |
| Helix 4 |
AA4 | A
| 59 |
77 | Right-handed alpha |
| Helix 5 |
AA5 | B
| 10 |
24 | Right-handed alpha |
| Helix 6 |
AA6 | B
| 31 |
43 | Right-handed alpha |
| Helix 7 |
AA7 | B
| 45 |
63 | Right-handed alpha |
| Helix 8 |
AA8 | B
| 69 |
74 | Right-handed 310 |
| Helix 9 |
AA9 | E
| 27 |
41 | Right-handed alpha |
| Helix 10 |
AB1 | E
| 45 |
56 | Right-handed alpha |
| Helix 11 |
AB2 | E
| 59 |
77 | Right-handed alpha |
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There are no sheets in PDB entry
5ZJT
Please mail
questions/suggestions concerning this page
to
Vladimir.Sobolev@weizmann.
ac.il