Analysis of interatomic Contacts of Structural Units in PDB entry:
5ZK6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5ZK6 entry

There is 1 chain in PDB entry 5ZK6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1THR 291
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 5ZK6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 24Right-handed alpha
Helix 2
AA2
A
33 35Right-handed 310
Helix 3
AA3
A
69 83Right-handed alpha
Helix 4
AA4
A
90 99Right-handed alpha
Helix 5
AA5
A
99 110Right-handed alpha
Helix 6
AA6
A
125 133Right-handed alpha
Helix 7
AA7
A
156 168Right-handed alpha
Helix 8
AA8
A
180 184Right-handed 310
Helix 9
AA9
A
226 240Right-handed alpha
Helix 10
AB1
A
267 275Right-handed alpha
Helix 11
AB2
A
277 290Right-handed alpha
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There are 4 sheets in PDB entry 5ZK6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
28 32first strand
Strand 2
A
2 6parallel
Strand 3
A
60 63parallel
Strand 4
A
86 87parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
37 39first strand
Strand 2
A
48 50anti-parallel
Strand 3
A
53 54anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
117 120first strand
Strand 2
A
173 178anti-parallel
Strand 3
A
138 144anti-parallel
Strand 4
A
147 154anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
219 222first strand
Strand 2
A
196 204anti-parallel
Strand 3
A
186 193anti-parallel
Strand 4
A
244 252anti-parallel
Strand 5
A
255 262anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il