Analysis of interatomic Contacts of Structural Units in PDB entry:
5ZKA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5ZKA entry

There are 3 chains in PDB entry 5ZKA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA -2VAL 160
A
 PHE 162LYS 289
B
 LEU -6LYS 289
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 5ZKA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
-2 2Right-handed 310
Helix 2
AA2
A
19 33Right-handed alpha
Helix 3
AA3
A
43 51Right-handed 310
Helix 4
AA4
A
52 68Right-handed alpha
Helix 5
AA5
A
81 96Right-handed alpha
Helix 6
AA6
A
111 127Right-handed alpha
Helix 7
AA7
A
135 140Right-handed alpha
Helix 8
AA8
A
144 153Right-handed alpha
Helix 9
AA9
A
166 177Right-handed alpha
Helix 10
AB1
A
186 188Right-handed 310
Helix 11
AB2
A
189 196Right-handed alpha
Helix 12
AB3
A
205 221Right-handed alpha
Helix 13
AB4
A
224 246Right-handed alpha
Helix 14
AB5
A
246 258Right-handed alpha
Helix 15
AB6
A
273 288Right-handed alpha
Helix 16
AB7
B
-2 2Right-handed 310
Helix 17
AB8
B
19 33Right-handed alpha
Helix 18
AB9
B
52 68Right-handed alpha
Helix 19
AC1
B
81 96Right-handed alpha
Helix 20
AC2
B
111 127Right-handed alpha
Helix 21
AC3
B
144 153Right-handed alpha
Helix 22
AC4
B
166 177Right-handed alpha
Helix 23
AC5
B
186 188Right-handed 310
Helix 24
AC6
B
189 196Right-handed alpha
Helix 25
AC7
B
205 222Right-handed alpha
Helix 26
AC8
B
224 246Right-handed alpha
Helix 27
AC9
B
246 258Right-handed alpha
Helix 28
AD1
B
273 288Right-handed alpha
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There are 2 sheets in PDB entry 5ZKA. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 7first strand
Strand 2
A
38 41parallel
Strand 3
A
72 76parallel
Strand 4
A
100 103parallel
Strand 5
A
130 134parallel
Strand 6
A
157 162parallel
Strand 7
A
181 184parallel
Strand 8
A
200 203parallel
Strand 9
A
3 7parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 7first strand
Strand 2
B
38 41parallel
Strand 3
B
72 76parallel
Strand 4
B
100 102parallel
Strand 5
B
130 133parallel
Strand 6
B
157 162parallel
Strand 7
B
181 184parallel
Strand 8
B
200 203parallel
Strand 9
B
3 7parallel
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