Analysis of interatomic Contacts of Structural Units in PDB entry:
5ZKF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5ZKF entry

There are 8 chains in PDB entry 5ZKF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 MET 1MET 1
B
 VAL 3GLU 174
A
 MET 1MET 1
A
 VAL 3GLU 174
C
 MET 1MET 1
C
 VAL 3LEU 173
D
 MET 1MET 1
D
 VAL 3GLU 174
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 35 helices in PDB entry 5ZKF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
10 27Right-handed alpha
Helix 2
AA2
B
56 68Right-handed alpha
Helix 3
AA3
B
70 76Right-handed alpha
Helix 4
AA4
B
77 80Right-handed 310
Helix 5
AA5
B
81 95Right-handed alpha
Helix 6
AA6
B
100 111Right-handed alpha
Helix 7
AA7
B
124 140Right-handed alpha
Helix 8
AA8
B
142 147Right-handed alpha
Helix 9
AA9
B
149 163Right-handed alpha
Helix 10
AB1
A
10 27Right-handed alpha
Helix 11
AB2
A
56 69Right-handed alpha
Helix 12
AB3
A
70 76Right-handed alpha
Helix 13
AB4
A
81 95Right-handed alpha
Helix 14
AB5
A
100 111Right-handed alpha
Helix 15
AB6
A
124 140Right-handed alpha
Helix 16
AB7
A
142 148Right-handed alpha
Helix 17
AB8
A
149 163Right-handed alpha
Helix 18
AB9
C
10 27Right-handed alpha
Helix 19
AC1
C
56 69Right-handed alpha
Helix 20
AC2
C
70 76Right-handed alpha
Helix 21
AC3
C
77 80Right-handed 310
Helix 22
AC4
C
81 95Right-handed alpha
Helix 23
AC5
C
100 114Right-handed alpha
Helix 24
AC6
C
124 141Right-handed alpha
Helix 25
AC7
C
142 147Right-handed alpha
Helix 26
AC8
C
149 164Right-handed alpha
Helix 27
AC9
D
10 27Right-handed alpha
Helix 28
AD1
D
56 69Right-handed alpha
Helix 29
AD2
D
70 76Right-handed alpha
Helix 30
AD3
D
77 80Right-handed 310
Helix 31
AD4
D
81 95Right-handed alpha
Helix 32
AD5
D
100 114Right-handed alpha
Helix 33
AD6
D
124 140Right-handed alpha
Helix 34
AD7
D
142 147Right-handed alpha
Helix 35
AD8
D
149 164Right-handed alpha
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There are 4 sheets in PDB entry 5ZKF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
38 41first strand
Strand 2
B
2 6parallel
Strand 3
B
46 49anti-parallel
Strand 4
B
52 55anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
38 42first strand
Strand 2
A
3 7parallel
Strand 3
A
46 49anti-parallel
Strand 4
A
52 55anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
38 42first strand
Strand 2
C
3 7parallel
Strand 3
C
46 49anti-parallel
Strand 4
C
52 55anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
38 41first strand
Strand 2
D
2 6parallel
Strand 3
D
46 49anti-parallel
Strand 4
D
52 55anti-parallel
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