Analysis of interatomic Contacts of Structural Units in PDB entry:
5ZKS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5ZKS entry

There is 1 chain in PDB entry 5ZKS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 4VAL 443
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 5ZKS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 12Right-handed 310
Helix 2
AA2
A
16 36Right-handed alpha
Helix 3
AA3
A
82 88Right-handed alpha
Helix 4
AA4
A
89 97Right-handed 310
Helix 5
AA5
A
118 121Right-handed 310
Helix 6
AA6
A
158 162Right-handed 310
Helix 7
AA7
A
309 313Right-handed 310
Helix 8
AA8
A
345 349Right-handed 310
Helix 9
AA9
A
386 397Right-handed alpha
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There are 5 sheets in PDB entry 5ZKS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 14 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 8first strand
Strand 2
A
49 53parallel
Strand 3
A
71 75parallel
Strand 4
A
139 141parallel
Strand 5
A
180 182parallel
Strand 6
A
202 204parallel
Strand 7
A
225 227parallel
Strand 8
A
249 251parallel
Strand 9
A
272 274parallel
Strand 10
A
296 298parallel
Strand 11
A
334 336parallel
Strand 12
A
368 370parallel
Strand 13
A
418 420parallel
Strand 14
A
436 438parallel
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There are 12 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 60first strand
Strand 2
A
105 109parallel
Strand 3
A
144 146parallel
Strand 4
A
185 187parallel
Strand 5
A
207 209parallel
Strand 6
A
230 232parallel
Strand 7
A
254 256parallel
Strand 8
A
277 280parallel
Strand 9
A
301 304parallel
Strand 10
A
339 344parallel
Strand 11
A
373 378parallel
Strand 12
A
401 402anti-parallel
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There are 12 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
64 66first strand
Strand 2
A
123 127parallel
Strand 3
A
168 172parallel
Strand 4
A
191 199parallel
Strand 5
A
213 222parallel
Strand 6
A
238 243parallel
Strand 7
A
261 266parallel
Strand 8
A
286 289parallel
Strand 9
A
326 329parallel
Strand 10
A
357 365parallel
Strand 11
A
406 410parallel
Strand 12
A
428 429parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
135 136first strand
Strand 2
A
176 177parallel
Strand 3
A
191 199parallel
Strand 4
A
213 222parallel
Strand 5
A
245 246parallel
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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
245 246first strand
Strand 2
A
213 222parallel
Strand 3
A
238 243parallel
Strand 4
A
261 266parallel
Strand 5
A
286 289parallel
Strand 6
A
326 329parallel
Strand 7
A
357 365parallel
Strand 8
A
414 415parallel
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