Analysis of interatomic Contacts of Structural Units in PDB entry:
5ZL2

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5ZL2 entry

There are 3 chains in PDB entry 5ZL2 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 3	GLY 445
B	LEU 3	GLY 445
C	LEU 3	GLY 445

There are 19 helices in PDB entry 5ZL2. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	78	89	Right-handed alpha
Helix 2	AA2	A	103	109	Right-handed 310
Helix 3	AA3	A	275	280	Right-handed alpha
Helix 4	AA4	A	283	327	Right-handed alpha
Helix 5	AA5	A	332	338	Right-handed alpha
Helix 6	AA6	A	421	438	Right-handed alpha
Helix 7	AA7	B	78	89	Right-handed alpha
Helix 8	AA8	B	103	109	Right-handed 310
Helix 9	AA9	B	275	280	Right-handed alpha
Helix 10	AB1	B	283	328	Right-handed alpha
Helix 11	AB2	B	332	338	Right-handed alpha
Helix 12	AB3	B	421	438	Right-handed alpha
Helix 13	AB4	C	78	89	Right-handed alpha
Helix 14	AB5	C	103	109	Right-handed 310
Helix 15	AB6	C	275	280	Right-handed alpha
Helix 16	AB7	C	283	327	Right-handed alpha
Helix 17	AB8	C	332	339	Right-handed alpha
Helix 18	AB9	C	417	420	Right-handed 310
Helix 19	AC1	C	421	438	Right-handed alpha

There are 21 sheets in PDB entry 5ZL2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	241	245	first strand
Strand 2	A	234	238	anti-parallel
Strand 3	A	200	210	anti-parallel
Strand 4	A	26	36	anti-parallel
Strand 5	A	256	260	anti-parallel
Strand 6	A	250	252	anti-parallel
Strand 7	A	271	272	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	67	74	first strand
Strand 2	A	44	58	anti-parallel
Strand 3	A	134	148	anti-parallel
Strand 4	A	97	101	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	67	74	first strand
Strand 2	A	44	58	anti-parallel
Strand 3	A	188	192	anti-parallel
Strand 4	A	182	185	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	91	93	first strand
Strand 2	A	116	118	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	126	127	first strand
Strand 2	A	442	443	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	153	155	first strand
Strand 2	A	162	166	anti-parallel
Strand 3	A	172	174	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	342	346	first strand
Strand 2	A	352	356	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	241	245	first strand
Strand 2	B	234	238	anti-parallel
Strand 3	B	200	210	anti-parallel
Strand 4	B	26	36	anti-parallel
Strand 5	B	256	260	anti-parallel
Strand 6	B	250	252	anti-parallel
Strand 7	B	271	272	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	67	74	first strand
Strand 2	B	44	58	anti-parallel
Strand 3	B	134	148	anti-parallel
Strand 4	B	97	101	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	67	74	first strand
Strand 2	B	44	58	anti-parallel
Strand 3	B	188	192	anti-parallel
Strand 4	B	182	185	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	91	93	first strand
Strand 2	B	116	118	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	126	127	first strand
Strand 2	B	442	443	parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	153	155	first strand
Strand 2	B	162	166	anti-parallel
Strand 3	B	172	174	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	342	346	first strand
Strand 2	B	352	356	anti-parallel

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There are 7 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	241	245	first strand
Strand 2	C	234	238	anti-parallel
Strand 3	C	200	210	anti-parallel
Strand 4	C	26	36	anti-parallel
Strand 5	C	256	260	anti-parallel
Strand 6	C	250	252	anti-parallel
Strand 7	C	271	272	parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	67	74	first strand
Strand 2	C	44	58	anti-parallel
Strand 3	C	134	148	anti-parallel
Strand 4	C	97	101	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	67	74	first strand
Strand 2	C	44	58	anti-parallel
Strand 3	C	188	192	anti-parallel
Strand 4	C	182	185	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	91	93	first strand
Strand 2	C	116	118	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	126	127	first strand
Strand 2	C	442	443	parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	153	155	first strand
Strand 2	C	162	166	anti-parallel
Strand 3	C	172	174	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	342	346	first strand
Strand 2	C	352	356	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5ZL2

Analysis of interatomic Contacts of Structural Units in PDB entry:
5ZL2