Analysis of interatomic Contacts of Structural Units in PDB entry:
5ZL6

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5ZL6 entry

There are 4 chains in PDB entry 5ZL6 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 2	SER 373
B	ASN 2	SER 373
C	ASN 2	SER 373
D	ASN 2	SER 373

There are 55 helices in PDB entry 5ZL6. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	16	31	Right-handed alpha
Helix 2	AA2	A	39	45	Right-handed alpha
Helix 3	AA3	A	47	59	Right-handed alpha
Helix 4	AA4	A	67	77	Right-handed alpha
Helix 5	AA5	A	90	92	Right-handed 310
Helix 6	AA6	A	93	100	Right-handed alpha
Helix 7	AA7	A	108	120	Right-handed alpha
Helix 8	AA8	A	143	157	Right-handed alpha
Helix 9	AA9	A	179	192	Right-handed alpha
Helix 10	AB1	A	205	212	Right-handed alpha
Helix 11	AB2	A	224	229	Right-handed 310
Helix 12	AB3	A	344	353	Right-handed alpha
Helix 13	AB4	A	355	360	Right-handed alpha
Helix 14	AB5	B	16	31	Right-handed alpha
Helix 15	AB6	B	39	45	Right-handed alpha
Helix 16	AB7	B	47	59	Right-handed alpha
Helix 17	AB8	B	67	77	Right-handed alpha
Helix 18	AB9	B	90	92	Right-handed 310
Helix 19	AC1	B	93	100	Right-handed alpha
Helix 20	AC2	B	108	120	Right-handed alpha
Helix 21	AC3	B	143	157	Right-handed alpha
Helix 22	AC4	B	179	192	Right-handed alpha
Helix 23	AC5	B	205	212	Right-handed alpha
Helix 24	AC6	B	224	229	Right-handed 310
Helix 25	AC7	B	285	289	Right-handed 310
Helix 26	AC8	B	344	353	Right-handed alpha
Helix 27	AC9	B	355	360	Right-handed alpha
Helix 28	AD1	C	15	29	Right-handed alpha
Helix 29	AD2	C	39	45	Right-handed alpha
Helix 30	AD3	C	47	59	Right-handed alpha
Helix 31	AD4	C	67	77	Right-handed alpha
Helix 32	AD5	C	90	92	Right-handed 310
Helix 33	AD6	C	93	100	Right-handed alpha
Helix 34	AD7	C	108	120	Right-handed alpha
Helix 35	AD8	C	143	157	Right-handed alpha
Helix 36	AD9	C	176	192	Right-handed alpha
Helix 37	AE1	C	205	212	Right-handed alpha
Helix 38	AE2	C	224	229	Right-handed 310
Helix 39	AE3	C	266	270	Right-handed 310
Helix 40	AE4	C	344	353	Right-handed alpha
Helix 41	AE5	C	355	360	Right-handed alpha
Helix 42	AE6	D	16	31	Right-handed alpha
Helix 43	AE7	D	39	45	Right-handed alpha
Helix 44	AE8	D	47	59	Right-handed alpha
Helix 45	AE9	D	67	77	Right-handed alpha
Helix 46	AF1	D	90	92	Right-handed 310
Helix 47	AF2	D	93	100	Right-handed alpha
Helix 48	AF3	D	108	120	Right-handed alpha
Helix 49	AF4	D	143	157	Right-handed alpha
Helix 50	AF5	D	176	192	Right-handed alpha
Helix 51	AF6	D	205	212	Right-handed alpha
Helix 52	AF7	D	224	229	Right-handed 310
Helix 53	AF8	D	285	289	Right-handed 310
Helix 54	AF9	D	344	353	Right-handed alpha
Helix 55	AG1	D	355	361	Right-handed alpha

There are 16 sheets in PDB entry 5ZL6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	255	259	first strand
Strand 2	A	277	282	anti-parallel
Strand 3	A	318	322	anti-parallel
Strand 4	A	306	310	anti-parallel
Strand 5	A	298	301	anti-parallel
Strand 6	A	331	338	anti-parallel
Strand 7	A	341	343	anti-parallel

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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	255	259	first strand
Strand 2	A	277	282	anti-parallel
Strand 3	A	318	322	anti-parallel
Strand 4	A	306	310	anti-parallel
Strand 5	A	298	301	anti-parallel
Strand 6	A	331	338	anti-parallel
Strand 7	A	247	252	anti-parallel
Strand 8	A	10	15	anti-parallel
Strand 9	A	368	372	parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	200	202	first strand
Strand 2	A	160	166	parallel
Strand 3	A	126	131	parallel
Strand 4	A	102	105	parallel
Strand 5	A	83	88	parallel
Strand 6	A	62	65	parallel
Strand 7	A	34	38	parallel
Strand 8	A	220	223	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	264	265	first strand
Strand 2	A	271	272	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	255	259	first strand
Strand 2	B	277	282	anti-parallel
Strand 3	B	318	322	anti-parallel
Strand 4	B	306	313	anti-parallel
Strand 5	B	298	301	anti-parallel
Strand 6	B	331	338	anti-parallel
Strand 7	B	341	343	anti-parallel

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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	255	259	first strand
Strand 2	B	277	282	anti-parallel
Strand 3	B	318	322	anti-parallel
Strand 4	B	306	313	anti-parallel
Strand 5	B	298	301	anti-parallel
Strand 6	B	331	338	anti-parallel
Strand 7	B	247	252	anti-parallel
Strand 8	B	10	15	anti-parallel
Strand 9	B	368	372	parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	200	202	first strand
Strand 2	B	160	166	parallel
Strand 3	B	126	131	parallel
Strand 4	B	102	105	parallel
Strand 5	B	83	88	parallel
Strand 6	B	62	65	parallel
Strand 7	B	34	38	parallel
Strand 8	B	220	223	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	264	265	first strand
Strand 2	B	271	272	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	255	259	first strand
Strand 2	C	277	282	anti-parallel
Strand 3	C	318	322	anti-parallel
Strand 4	C	306	310	anti-parallel
Strand 5	C	298	301	anti-parallel
Strand 6	C	331	338	anti-parallel
Strand 7	C	341	343	anti-parallel

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There are 9 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	255	259	first strand
Strand 2	C	277	282	anti-parallel
Strand 3	C	318	322	anti-parallel
Strand 4	C	306	310	anti-parallel
Strand 5	C	298	301	anti-parallel
Strand 6	C	331	338	anti-parallel
Strand 7	C	247	252	anti-parallel
Strand 8	C	10	14	anti-parallel
Strand 9	C	368	371	parallel

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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	200	202	first strand
Strand 2	C	160	166	parallel
Strand 3	C	126	131	parallel
Strand 4	C	102	105	parallel
Strand 5	C	83	88	parallel
Strand 6	C	62	65	parallel
Strand 7	C	34	38	parallel
Strand 8	C	220	223	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	264	265	first strand
Strand 2	C	271	272	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	255	259	first strand
Strand 2	D	277	282	anti-parallel
Strand 3	D	318	322	anti-parallel
Strand 4	D	306	310	anti-parallel
Strand 5	D	298	301	anti-parallel
Strand 6	D	331	338	anti-parallel
Strand 7	D	341	343	anti-parallel

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There are 9 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	255	259	first strand
Strand 2	D	277	282	anti-parallel
Strand 3	D	318	322	anti-parallel
Strand 4	D	306	310	anti-parallel
Strand 5	D	298	301	anti-parallel
Strand 6	D	331	338	anti-parallel
Strand 7	D	247	252	anti-parallel
Strand 8	D	10	15	anti-parallel
Strand 9	D	368	372	parallel

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There are 8 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	200	202	first strand
Strand 2	D	160	166	parallel
Strand 3	D	126	131	parallel
Strand 4	D	102	105	parallel
Strand 5	D	83	88	parallel
Strand 6	D	62	65	parallel
Strand 7	D	34	38	parallel
Strand 8	D	220	223	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	264	265	first strand
Strand 2	D	271	272	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5ZL6

Analysis of interatomic Contacts of Structural Units in PDB entry:
5ZL6