Analysis of interatomic Contacts of Structural Units in PDB entry:
5ZL9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5ZL9 entry

There is 1 chain in PDB entry 5ZL9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 24HIS 636
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 5ZL9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
49 52Right-handed 310
Helix 2
AA2
A
167 170Right-handed 310
Helix 3
AA3
A
175 179Right-handed 310
Helix 4
AA4
A
180 184Right-handed 310
Helix 5
AA5
A
201 207Right-handed 310
Helix 6
AA6
A
209 218Right-handed alpha
Helix 7
AA7
A
230 236Right-handed alpha
Helix 8
AA8
A
250 263Right-handed alpha
Helix 9
AA9
A
278 284Right-handed 310
Helix 10
AB1
A
286 304Right-handed alpha
Helix 11
AB2
A
330 354Right-handed alpha
Helix 12
AB3
A
369 381Right-handed alpha
Helix 13
AB4
A
382 384Right-handed 310
Helix 14
AB5
A
421 432Right-handed alpha
Helix 15
AB6
A
435 437Right-handed 310
Helix 16
AB7
A
460 464Right-handed 310
Helix 17
AB8
A
481 488Right-handed alpha
Helix 18
AB9
A
519 533Right-handed alpha
Helix 19
AC1
A
542 546Right-handed 310
Helix 20
AC2
A
548 558Right-handed alpha
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There are 8 sheets in PDB entry 5ZL9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 31first strand
Strand 2
A
60 67anti-parallel
Strand 3
A
95 102anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
37 39first strand
Strand 2
A
126 131parallel
Strand 3
A
106 116anti-parallel
Strand 4
A
76 81anti-parallel
Strand 5
A
84 90anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
37 39first strand
Strand 2
A
126 131parallel
Strand 3
A
106 116anti-parallel
Strand 4
A
119 122anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 43first strand
Strand 2
A
54 56anti-parallel
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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
159 165first strand
Strand 2
A
186 192parallel
Strand 3
A
267 274parallel
Strand 4
A
309 314parallel
Strand 5
A
358 364parallel
Strand 6
A
386 390parallel
Strand 7
A
439 444parallel
Strand 8
A
537 541parallel
Strand 9
A
159 165parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
468 469first strand
Strand 2
A
446 451anti-parallel
Strand 3
A
478 480anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
468 469first strand
Strand 2
A
446 451anti-parallel
Strand 3
A
514 516anti-parallel
Strand 4
A
503 507anti-parallel
Strand 5
A
494 498anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
603 606first strand
Strand 2
A
609 613anti-parallel
Strand 3
A
628 633anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il