Analysis of interatomic Contacts of Structural Units in PDB entry:
5ZLI

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5ZLI entry

There are 6 chains in PDB entry 5ZLI (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 8	CYS 481
B	ASN 7	CYS 481
C	SER 8	CYS 481
D	ASN 7	CYS 481
E	SER 8	CYS 481
F	SER 8	CYS 481

There are119 helices in PDB entry 5ZLI. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	8	22	Right-handed alpha
Helix 2	AA2	A	46	49	Right-handed 310
Helix 3	AA3	A	50	56	Right-handed alpha
Helix 4	AA4	A	69	72	Right-handed 310
Helix 5	AA5	A	113	129	Right-handed alpha
Helix 6	AA6	A	166	170	Right-handed 310
Helix 7	AA7	A	199	213	Right-handed alpha
Helix 8	AA8	A	238	259	Right-handed alpha
Helix 9	AA9	A	301	314	Right-handed alpha
Helix 10	AB1	A	314	323	Right-handed alpha
Helix 11	AB2	A	325	332	Right-handed alpha
Helix 12	AB3	A	376	394	Right-handed alpha
Helix 13	AB4	A	410	417	Right-handed alpha
Helix 14	AB5	A	425	435	Right-handed alpha
Helix 15	AB6	A	437	442	Right-handed alpha
Helix 16	AB7	A	443	445	Right-handed 310
Helix 17	AB8	A	447	462	Right-handed alpha
Helix 18	AB9	A	462	467	Right-handed alpha
Helix 19	AC1	A	471	478	Right-handed alpha
Helix 20	AC2	B	8	21	Right-handed alpha
Helix 21	AC3	B	50	54	Right-handed 310
Helix 22	AC4	B	62	64	Right-handed 310
Helix 23	AC5	B	69	72	Right-handed 310
Helix 24	AC6	B	113	129	Right-handed alpha
Helix 25	AC7	B	166	170	Right-handed 310
Helix 26	AC8	B	199	213	Right-handed alpha
Helix 27	AC9	B	238	259	Right-handed alpha
Helix 28	AD1	B	301	314	Right-handed alpha
Helix 29	AD2	B	314	323	Right-handed alpha
Helix 30	AD3	B	325	332	Right-handed alpha
Helix 31	AD4	B	376	394	Right-handed alpha
Helix 32	AD5	B	405	409	Right-handed 310
Helix 33	AD6	B	410	416	Right-handed alpha
Helix 34	AD7	B	425	435	Right-handed alpha
Helix 35	AD8	B	437	442	Right-handed alpha
Helix 36	AD9	B	443	445	Right-handed 310
Helix 37	AE1	B	447	462	Right-handed alpha
Helix 38	AE2	B	462	467	Right-handed alpha
Helix 39	AE3	B	471	479	Right-handed alpha
Helix 40	AE4	C	9	21	Right-handed alpha
Helix 41	AE5	C	46	48	Right-handed 310
Helix 42	AE6	C	51	56	Right-handed alpha
Helix 43	AE7	C	69	72	Right-handed 310
Helix 44	AE8	C	113	129	Right-handed alpha
Helix 45	AE9	C	166	170	Right-handed 310
Helix 46	AF1	C	199	213	Right-handed alpha
Helix 47	AF2	C	238	259	Right-handed alpha
Helix 48	AF3	C	301	314	Right-handed alpha
Helix 49	AF4	C	314	323	Right-handed alpha
Helix 50	AF5	C	326	332	Right-handed alpha
Helix 51	AF6	C	360	364	Right-handed 310
Helix 52	AF7	C	376	394	Right-handed alpha
Helix 53	AF8	C	410	416	Right-handed alpha
Helix 54	AF9	C	425	435	Right-handed alpha
Helix 55	AG1	C	437	442	Right-handed alpha
Helix 56	AG2	C	443	445	Right-handed 310
Helix 57	AG3	C	447	462	Right-handed alpha
Helix 58	AG4	C	462	469	Right-handed alpha
Helix 59	AG5	C	471	479	Right-handed alpha
Helix 60	AG6	D	8	21	Right-handed alpha
Helix 61	AG7	D	46	48	Right-handed 310
Helix 62	AG8	D	51	56	Right-handed alpha
Helix 63	AG9	D	69	72	Right-handed 310
Helix 64	AH1	D	113	129	Right-handed alpha
Helix 65	AH2	D	166	170	Right-handed 310
Helix 66	AH3	D	199	213	Right-handed alpha
Helix 67	AH4	D	238	259	Right-handed alpha
Helix 68	AH5	D	301	314	Right-handed alpha
Helix 69	AH6	D	314	323	Right-handed alpha
Helix 70	AH7	D	326	332	Right-handed alpha
Helix 71	AH8	D	360	364	Right-handed 310
Helix 72	AH9	D	376	394	Right-handed alpha
Helix 73	AI1	D	410	416	Right-handed alpha
Helix 74	AI2	D	425	435	Right-handed alpha
Helix 75	AI3	D	441	445	Right-handed 310
Helix 76	AI4	D	447	462	Right-handed alpha
Helix 77	AI5	D	462	469	Right-handed alpha
Helix 78	AI6	D	471	478	Right-handed alpha
Helix 79	AI7	E	9	22	Right-handed alpha
Helix 80	AI8	E	46	48	Right-handed 310
Helix 81	AI9	E	49	50	Right-handed 310
Helix 82	AJ1	E	51	56	Right-handed alpha
Helix 83	AJ2	E	69	72	Right-handed 310
Helix 84	AJ3	E	113	128	Right-handed alpha
Helix 85	AJ4	E	166	170	Right-handed 310
Helix 86	AJ5	E	199	213	Right-handed alpha
Helix 87	AJ6	E	238	259	Right-handed alpha
Helix 88	AJ7	E	301	314	Right-handed alpha
Helix 89	AJ8	E	314	323	Right-handed alpha
Helix 90	AJ9	E	327	332	Right-handed alpha
Helix 91	AK1	E	376	395	Right-handed alpha
Helix 92	AK2	E	410	417	Right-handed alpha
Helix 93	AK3	E	425	435	Right-handed alpha
Helix 94	AK4	E	437	442	Right-handed alpha
Helix 95	AK5	E	443	445	Right-handed 310
Helix 96	AK6	E	447	462	Right-handed alpha
Helix 97	AK7	E	462	469	Right-handed alpha
Helix 98	AK8	E	471	478	Right-handed alpha
Helix 99	AK9	F	9	22	Right-handed alpha
Helix 100	AL1	F	46	48	Right-handed 310
Helix 101	AL2	F	49	50	Right-handed 310
Helix 102	AL3	F	51	56	Right-handed alpha
Helix 103	AL4	F	62	64	Right-handed 310
Helix 104	AL5	F	69	72	Right-handed 310
Helix 105	AL6	F	113	129	Right-handed alpha
Helix 106	AL7	F	166	170	Right-handed 310
Helix 107	AL8	F	199	213	Right-handed alpha
Helix 108	AL9	F	238	259	Right-handed alpha
Helix 109	AM1	F	301	314	Right-handed alpha
Helix 110	AM2	F	314	323	Right-handed alpha
Helix 111	AM3	F	327	332	Right-handed alpha
Helix 112	AM4	F	376	394	Right-handed alpha
Helix 113	AM5	F	410	417	Right-handed alpha
Helix 114	AM6	F	425	436	Right-handed alpha
Helix 115	AM7	F	437	442	Right-handed alpha
Helix 116	AM8	F	443	445	Right-handed 310
Helix 117	AM9	F	447	462	Right-handed alpha
Helix 118	AN1	F	462	469	Right-handed alpha
Helix 119	AN2	F	471	478	Right-handed alpha

There are 29 sheets in PDB entry 5ZLI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	57	60	first strand
Strand 2	A	74	79	anti-parallel
Strand 3	A	94	103	anti-parallel
Strand 4	A	108	109	anti-parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	85	86	first strand
Strand 2	A	94	103	anti-parallel
Strand 3	A	26	32	parallel
Strand 4	A	38	44	anti-parallel
Strand 5	B	217	222	anti-parallel
Strand 6	B	228	233	anti-parallel
Strand 7	B	142	145	anti-parallel
Strand 8	B	262	264	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	236	237	first strand
Strand 2	A	133	140	anti-parallel
Strand 3	A	278	286	anti-parallel
Strand 4	A	289	290	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	236	237	first strand
Strand 2	A	133	140	anti-parallel
Strand 3	A	278	286	anti-parallel
Strand 4	A	366	368	anti-parallel
Strand 5	A	353	355	anti-parallel
Strand 6	A	344	346	parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	262	264	first strand
Strand 2	A	142	145	anti-parallel
Strand 3	A	228	233	anti-parallel
Strand 4	A	217	222	anti-parallel
Strand 5	F	38	44	anti-parallel
Strand 6	F	26	32	anti-parallel
Strand 7	F	94	103	parallel
Strand 8	F	85	86	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	57	60	first strand
Strand 2	F	74	79	anti-parallel
Strand 3	F	94	103	anti-parallel
Strand 4	F	108	109	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	147	153	first strand
Strand 2	A	156	162	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	57	60	first strand
Strand 2	B	74	87	anti-parallel
Strand 3	B	94	103	anti-parallel
Strand 4	B	108	109	anti-parallel

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There are 9 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	57	60	first strand
Strand 2	B	74	87	anti-parallel
Strand 3	B	94	103	anti-parallel
Strand 4	B	26	32	parallel
Strand 5	B	38	44	anti-parallel
Strand 6	C	217	222	anti-parallel
Strand 7	C	228	233	anti-parallel
Strand 8	C	142	145	anti-parallel
Strand 9	C	262	264	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	236	237	first strand
Strand 2	B	133	140	anti-parallel
Strand 3	B	278	286	anti-parallel
Strand 4	B	289	290	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	236	237	first strand
Strand 2	B	133	140	anti-parallel
Strand 3	B	278	286	anti-parallel
Strand 4	B	366	368	anti-parallel
Strand 5	B	351	355	anti-parallel
Strand 6	B	341	346	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	147	153	first strand
Strand 2	B	156	162	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	57	60	first strand
Strand 2	C	74	79	anti-parallel
Strand 3	C	94	103	anti-parallel
Strand 4	C	108	109	anti-parallel

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There are 8 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	85	86	first strand
Strand 2	C	94	103	anti-parallel
Strand 3	C	26	32	parallel
Strand 4	C	38	44	anti-parallel
Strand 5	D	217	222	anti-parallel
Strand 6	D	228	233	anti-parallel
Strand 7	D	142	145	anti-parallel
Strand 8	D	262	264	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	236	237	first strand
Strand 2	C	133	140	anti-parallel
Strand 3	C	278	286	anti-parallel
Strand 4	C	289	290	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	236	237	first strand
Strand 2	C	133	140	anti-parallel
Strand 3	C	278	286	anti-parallel
Strand 4	C	367	368	anti-parallel
Strand 5	C	351	355	anti-parallel
Strand 6	C	341	346	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	147	153	first strand
Strand 2	C	156	162	anti-parallel

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There are 9 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	57	60	first strand
Strand 2	D	74	86	anti-parallel
Strand 3	D	94	102	anti-parallel
Strand 4	D	26	32	parallel
Strand 5	D	38	44	anti-parallel
Strand 6	E	217	222	anti-parallel
Strand 7	E	228	233	anti-parallel
Strand 8	E	142	145	anti-parallel
Strand 9	E	262	264	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	236	237	first strand
Strand 2	D	133	140	anti-parallel
Strand 3	D	278	286	anti-parallel
Strand 4	D	289	290	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	236	237	first strand
Strand 2	D	133	140	anti-parallel
Strand 3	D	278	286	anti-parallel
Strand 4	D	366	368	anti-parallel
Strand 5	D	351	355	anti-parallel
Strand 6	D	341	346	parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	147	153	first strand
Strand 2	D	156	162	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	57	60	first strand
Strand 2	E	74	86	anti-parallel
Strand 3	E	94	103	anti-parallel
Strand 4	E	108	109	anti-parallel

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There are 9 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	57	60	first strand
Strand 2	E	74	86	anti-parallel
Strand 3	E	94	103	anti-parallel
Strand 4	E	26	32	parallel
Strand 5	E	38	44	anti-parallel
Strand 6	F	217	222	anti-parallel
Strand 7	F	228	233	anti-parallel
Strand 8	F	142	145	anti-parallel
Strand 9	F	262	264	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	236	237	first strand
Strand 2	E	133	140	anti-parallel
Strand 3	E	278	286	anti-parallel
Strand 4	E	289	290	anti-parallel

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There are 6 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	236	237	first strand
Strand 2	E	133	140	anti-parallel
Strand 3	E	278	286	anti-parallel
Strand 4	E	366	368	anti-parallel
Strand 5	E	351	355	anti-parallel
Strand 6	E	341	346	parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	147	153	first strand
Strand 2	E	156	162	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	236	237	first strand
Strand 2	F	133	140	anti-parallel
Strand 3	F	278	286	anti-parallel
Strand 4	F	289	290	anti-parallel

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There are 6 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	236	237	first strand
Strand 2	F	133	140	anti-parallel
Strand 3	F	278	286	anti-parallel
Strand 4	F	366	368	anti-parallel
Strand 5	F	353	355	anti-parallel
Strand 6	F	344	346	parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	147	153	first strand
Strand 2	F	156	162	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5ZLI

Analysis of interatomic Contacts of Structural Units in PDB entry:
5ZLI