Analysis of interatomic Contacts of Structural Units in PDB entry:
5ZM5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5ZM5 entry

There are 6 chains in PDB entry 5ZM5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 533LYS 555
A
 ILE 557CYS 710
A
 VAL 712PRO 745
A
 GLY 747LEU 768
A
 ALA 770GLU 777
A
 LEU 779LEU 951
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 5ZM5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
548 558Right-handed alpha
Helix 2
AA2
A
567 569Right-handed 310
Helix 3
AA3
A
576 582Right-handed alpha
Helix 4
AA4
A
583 586Right-handed 310
Helix 5
AA5
A
587 595Right-handed alpha
Helix 6
AA6
A
598 614Right-handed alpha
Helix 7
AA7
A
615 618Right-handed 310
Helix 8
AA8
A
698 700Right-handed 310
Helix 9
AA9
A
747 751Right-handed 310
Helix 10
AB1
A
783 793Right-handed alpha
Helix 11
AB2
A
842 846Right-handed 310
Helix 12
AB3
A
850 857Right-handed alpha
Helix 13
AB4
A
860 865Right-handed alpha
Helix 14
AB5
A
871 874Right-handed 310
Helix 15
AB6
A
875 883Right-handed alpha
Helix 16
AB7
A
885 910Right-handed alpha
Helix 17
AB8
A
937 941Right-handed 310
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There are 4 sheets in PDB entry 5ZM5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
571 575first strand
Strand 2
A
623 625parallel
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There are 12 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
632 637first strand
Strand 2
A
642 650anti-parallel
Strand 3
A
655 662anti-parallel
Strand 4
A
667 680anti-parallel
Strand 5
A
683 689anti-parallel
Strand 6
A
709 713anti-parallel
Strand 7
A
721 732anti-parallel
Strand 8
A
738 743anti-parallel
Strand 9
A
755 761anti-parallel
Strand 10
A
767 774anti-parallel
Strand 11
A
778 782anti-parallel
Strand 12
A
831 835anti-parallel
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There are 12 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
632 637first strand
Strand 2
A
642 650anti-parallel
Strand 3
A
655 662anti-parallel
Strand 4
A
667 680anti-parallel
Strand 5
A
692 696anti-parallel
Strand 6
A
701 705anti-parallel
Strand 7
A
721 732anti-parallel
Strand 8
A
738 743anti-parallel
Strand 9
A
755 761anti-parallel
Strand 10
A
767 774anti-parallel
Strand 11
A
778 782anti-parallel
Strand 12
A
831 835anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
919 923first strand
Strand 2
A
930 934anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il