Analysis of interatomic Contacts of Structural Units in PDB entry:
5ZM6

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5ZM6 entry

There are 2 chains in PDB entry 5ZM6 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	HIS 533	TYR 950
B	LYS 531	TYR 950

There are 33 helices in PDB entry 5ZM6. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	549	562	Right-handed alpha
Helix 2	AA2	A	567	569	Right-handed 310
Helix 3	AA3	A	576	582	Right-handed alpha
Helix 4	AA4	A	583	586	Right-handed 310
Helix 5	AA5	A	587	595	Right-handed alpha
Helix 6	AA6	A	598	614	Right-handed alpha
Helix 7	AA7	A	615	618	Right-handed 310
Helix 8	AA8	A	697	700	Right-handed 310
Helix 9	AA9	A	747	751	Right-handed 310
Helix 10	AB1	A	783	791	Right-handed alpha
Helix 11	AB2	A	842	846	Right-handed 310
Helix 12	AB3	A	850	856	Right-handed alpha
Helix 13	AB4	A	860	867	Right-handed alpha
Helix 14	AB5	A	871	874	Right-handed 310
Helix 15	AB6	A	875	883	Right-handed alpha
Helix 16	AB7	A	885	910	Right-handed alpha
Helix 17	AB8	A	937	941	Right-handed 310
Helix 18	AB9	B	550	556	Right-handed alpha
Helix 19	AC1	B	567	569	Right-handed 310
Helix 20	AC2	B	576	582	Right-handed alpha
Helix 21	AC3	B	583	586	Right-handed 310
Helix 22	AC4	B	587	595	Right-handed alpha
Helix 23	AC5	B	598	613	Right-handed alpha
Helix 24	AC6	B	614	618	Right-handed 310
Helix 25	AC7	B	698	700	Right-handed 310
Helix 26	AC8	B	783	791	Right-handed alpha
Helix 27	AC9	B	842	846	Right-handed 310
Helix 28	AD1	B	852	856	Right-handed 310
Helix 29	AD2	B	860	867	Right-handed alpha
Helix 30	AD3	B	871	874	Right-handed 310
Helix 31	AD4	B	875	883	Right-handed alpha
Helix 32	AD5	B	885	910	Right-handed alpha
Helix 33	AD6	B	937	941	Right-handed 310

There are 8 sheets in PDB entry 5ZM6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	571	575	first strand
Strand 2	A	623	625	parallel

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There are 12 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	632	637	first strand
Strand 2	A	642	650	anti-parallel
Strand 3	A	655	662	anti-parallel
Strand 4	A	668	680	anti-parallel
Strand 5	A	683	689	anti-parallel
Strand 6	A	709	713	anti-parallel
Strand 7	A	721	732	anti-parallel
Strand 8	A	737	743	anti-parallel
Strand 9	A	755	761	anti-parallel
Strand 10	A	767	774	anti-parallel
Strand 11	A	778	782	anti-parallel
Strand 12	A	831	835	anti-parallel

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There are 12 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	632	637	first strand
Strand 2	A	642	650	anti-parallel
Strand 3	A	655	662	anti-parallel
Strand 4	A	668	680	anti-parallel
Strand 5	A	692	696	anti-parallel
Strand 6	A	701	705	anti-parallel
Strand 7	A	721	732	anti-parallel
Strand 8	A	737	743	anti-parallel
Strand 9	A	755	761	anti-parallel
Strand 10	A	767	774	anti-parallel
Strand 11	A	778	782	anti-parallel
Strand 12	A	831	835	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	919	923	first strand
Strand 2	A	930	934	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	571	575	first strand
Strand 2	B	623	625	parallel

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There are 12 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	632	637	first strand
Strand 2	B	642	650	anti-parallel
Strand 3	B	655	662	anti-parallel
Strand 4	B	667	680	anti-parallel
Strand 5	B	683	689	anti-parallel
Strand 6	B	709	713	anti-parallel
Strand 7	B	721	732	anti-parallel
Strand 8	B	737	743	anti-parallel
Strand 9	B	755	761	anti-parallel
Strand 10	B	767	774	anti-parallel
Strand 11	B	778	782	anti-parallel
Strand 12	B	831	835	anti-parallel

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There are 12 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	632	637	first strand
Strand 2	B	642	650	anti-parallel
Strand 3	B	655	662	anti-parallel
Strand 4	B	667	680	anti-parallel
Strand 5	B	692	696	anti-parallel
Strand 6	B	701	705	anti-parallel
Strand 7	B	721	732	anti-parallel
Strand 8	B	737	743	anti-parallel
Strand 9	B	755	761	anti-parallel
Strand 10	B	767	774	anti-parallel
Strand 11	B	778	782	anti-parallel
Strand 12	B	831	835	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	919	923	first strand
Strand 2	B	930	934	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5ZM6

Analysis of interatomic Contacts of Structural Units in PDB entry:
5ZM6