Analysis of interatomic Contacts of Structural Units in PDB entry:
5ZM8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5ZM8 entry

There are 2 chains in PDB entry 5ZM8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 59	TYR 480
B	LYS 59	TYR 480

There are 31 helices in PDB entry 5ZM8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	75	83	Right-handed alpha
Helix 2	AA2	A	94	96	Right-handed 310
Helix 3	AA3	A	103	109	Right-handed alpha
Helix 4	AA4	A	110	113	Right-handed 310
Helix 5	AA5	A	114	122	Right-handed alpha
Helix 6	AA6	A	125	141	Right-handed alpha
Helix 7	AA7	A	142	145	Right-handed 310
Helix 8	AA8	A	225	227	Right-handed 310
Helix 9	AA9	A	274	278	Right-handed 310
Helix 10	AB1	A	310	316	Right-handed alpha
Helix 11	AB2	A	373	377	Right-handed 310
Helix 12	AB3	A	380	385	Right-handed alpha
Helix 13	AB4	A	392	396	Right-handed 310
Helix 14	AB5	A	401	404	Right-handed 310
Helix 15	AB6	A	405	413	Right-handed alpha
Helix 16	AB7	A	415	440	Right-handed alpha
Helix 17	AB8	B	75	82	Right-handed alpha
Helix 18	AB9	B	94	96	Right-handed 310
Helix 19	AC1	B	103	109	Right-handed alpha
Helix 20	AC2	B	110	113	Right-handed 310
Helix 21	AC3	B	114	122	Right-handed alpha
Helix 22	AC4	B	125	140	Right-handed alpha
Helix 23	AC5	B	141	145	Right-handed 310
Helix 24	AC6	B	274	278	Right-handed 310
Helix 25	AC7	B	310	332	Right-handed alpha
Helix 26	AC8	B	372	377	Right-handed 310
Helix 27	AC9	B	380	385	Right-handed alpha
Helix 28	AD1	B	401	404	Right-handed 310
Helix 29	AD2	B	405	413	Right-handed alpha
Helix 30	AD3	B	415	440	Right-handed alpha
Helix 31	AD4	B	467	471	Right-handed 310

There are 8 sheets in PDB entry 5ZM8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	98	102	first strand
Strand 2	A	150	152	parallel

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There are 12 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	159	164	first strand
Strand 2	A	169	177	anti-parallel
Strand 3	A	182	189	anti-parallel
Strand 4	A	194	207	anti-parallel
Strand 5	A	210	216	anti-parallel
Strand 6	A	236	240	anti-parallel
Strand 7	A	248	259	anti-parallel
Strand 8	A	265	270	anti-parallel
Strand 9	A	282	288	anti-parallel
Strand 10	A	294	301	anti-parallel
Strand 11	A	305	309	anti-parallel
Strand 12	A	361	365	anti-parallel

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There are 12 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	159	164	first strand
Strand 2	A	169	177	anti-parallel
Strand 3	A	182	189	anti-parallel
Strand 4	A	194	207	anti-parallel
Strand 5	A	219	223	anti-parallel
Strand 6	A	228	232	anti-parallel
Strand 7	A	248	259	anti-parallel
Strand 8	A	265	270	anti-parallel
Strand 9	A	282	288	anti-parallel
Strand 10	A	294	301	anti-parallel
Strand 11	A	305	309	anti-parallel
Strand 12	A	361	365	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	449	453	first strand
Strand 2	A	460	464	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	98	102	first strand
Strand 2	B	150	152	parallel

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There are 12 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	159	164	first strand
Strand 2	B	169	177	anti-parallel
Strand 3	B	182	189	anti-parallel
Strand 4	B	194	206	anti-parallel
Strand 5	B	210	216	anti-parallel
Strand 6	B	236	240	anti-parallel
Strand 7	B	248	259	anti-parallel
Strand 8	B	265	270	anti-parallel
Strand 9	B	282	288	anti-parallel
Strand 10	B	294	301	anti-parallel
Strand 11	B	305	309	anti-parallel
Strand 12	B	361	365	anti-parallel

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There are 12 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	159	164	first strand
Strand 2	B	169	177	anti-parallel
Strand 3	B	182	189	anti-parallel
Strand 4	B	194	206	anti-parallel
Strand 5	B	219	223	anti-parallel
Strand 6	B	228	232	anti-parallel
Strand 7	B	248	259	anti-parallel
Strand 8	B	265	270	anti-parallel
Strand 9	B	282	288	anti-parallel
Strand 10	B	294	301	anti-parallel
Strand 11	B	305	309	anti-parallel
Strand 12	B	361	365	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	449	453	first strand
Strand 2	B	460	464	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5ZM8

Analysis of interatomic Contacts of Structural Units in PDB entry:
5ZM8