Analysis of interatomic Contacts of Structural Units in PDB entry:
5ZMA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5ZMA entry

There are 3 chains in PDB entry 5ZMA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 ASP 264LEU 538
A
 ASP 264LEU 538
C
 GLU 268LEU 538
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 39 helices in PDB entry 5ZMA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
282 287Right-handed alpha
Helix 2
AA2
B
288 295Right-handed alpha
Helix 3
AA3
B
297 319Right-handed alpha
Helix 4
AA4
B
321 326Right-handed alpha
Helix 5
AA5
B
332 340Right-handed 310
Helix 6
AA6
B
377 395Right-handed alpha
Helix 7
AA7
B
397 401Right-handed 310
Helix 8
AA8
B
405 421Right-handed alpha
Helix 9
AA9
B
423 438Right-handed alpha
Helix 10
AB1
B
450 462Right-handed alpha
Helix 11
AB2
B
468 470Right-handed 310
Helix 12
AB3
B
479 492Right-handed alpha
Helix 13
AB4
B
522 535Right-handed alpha
Helix 14
AB5
A
288 294Right-handed alpha
Helix 15
AB6
A
297 319Right-handed alpha
Helix 16
AB7
A
321 326Right-handed alpha
Helix 17
AB8
A
332 336Right-handed 310
Helix 18
AB9
A
373 394Right-handed alpha
Helix 19
AC1
A
397 421Right-handed alpha
Helix 20
AC2
A
423 438Right-handed alpha
Helix 21
AC3
A
450 461Right-handed alpha
Helix 22
AC4
A
462 466Right-handed 310
Helix 23
AC5
A
468 470Right-handed 310
Helix 24
AC6
A
479 492Right-handed alpha
Helix 25
AC7
A
504 513Right-handed alpha
Helix 26
AC8
A
522 535Right-handed alpha
Helix 27
AC9
C
282 288Right-handed alpha
Helix 28
AD1
C
288 295Right-handed alpha
Helix 29
AD2
C
297 319Right-handed alpha
Helix 30
AD3
C
332 336Right-handed 310
Helix 31
AD4
C
378 395Right-handed alpha
Helix 32
AD5
C
398 403Right-handed alpha
Helix 33
AD6
C
404 422Right-handed alpha
Helix 34
AD7
C
423 438Right-handed alpha
Helix 35
AD8
C
450 461Right-handed alpha
Helix 36
AD9
C
468 470Right-handed 310
Helix 37
AE1
C
482 492Right-handed alpha
Helix 38
AE2
C
504 512Right-handed alpha
Helix 39
AE3
C
522 535Right-handed alpha
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There are 3 sheets in PDB entry 5ZMA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
472 474first strand
Strand 2
B
441 447parallel
Strand 3
B
269 273parallel
Strand 4
B
496 501parallel
Strand 5
B
517 519parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
472 474first strand
Strand 2
A
441 447parallel
Strand 3
A
269 274parallel
Strand 4
A
496 501parallel
Strand 5
A
517 519parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
472 474first strand
Strand 2
C
441 447parallel
Strand 3
C
269 273parallel
Strand 4
C
496 501parallel
Strand 5
C
517 519parallel
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