Analysis of interatomic Contacts of Structural Units in PDB entry:
5ZMM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5ZMM entry

There are 6 chains in PDB entry 5ZMM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 5	GLN 560
B	SER 4	GLN 560
C	THR 7	GLN 560
D	ARG 8	GLN 560
E	GLY 10	GLN 560
F	PRO 94	GLN 560

There are151 helices in PDB entry 5ZMM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	10	22	Right-handed alpha
Helix 2	AA2	A	22	27	Right-handed alpha
Helix 3	AA3	A	49	58	Right-handed alpha
Helix 4	AA4	A	81	86	Right-handed alpha
Helix 5	AA5	A	96	104	Right-handed alpha
Helix 6	AA6	A	115	130	Right-handed alpha
Helix 7	AA7	A	138	153	Right-handed alpha
Helix 8	AA8	A	157	169	Right-handed alpha
Helix 9	AA9	A	193	200	Right-handed alpha
Helix 10	AB1	A	207	217	Right-handed alpha
Helix 11	AB2	A	217	229	Right-handed alpha
Helix 12	AB3	A	246	251	Right-handed alpha
Helix 13	AB4	A	253	258	Right-handed 310
Helix 14	AB5	A	268	277	Right-handed alpha
Helix 15	AB6	A	328	340	Right-handed alpha
Helix 16	AB7	A	392	396	Right-handed 310
Helix 17	AB8	A	397	406	Right-handed alpha
Helix 18	AB9	A	415	417	Right-handed 310
Helix 19	AC1	A	419	423	Right-handed 310
Helix 20	AC2	A	436	439	Right-handed 310
Helix 21	AC3	A	440	456	Right-handed alpha
Helix 22	AC4	A	461	467	Right-handed alpha
Helix 23	AC5	A	469	481	Right-handed alpha
Helix 24	AC6	A	519	521	Right-handed 310
Helix 25	AC7	A	527	537	Right-handed alpha
Helix 26	AC8	A	539	558	Right-handed alpha
Helix 27	AC9	B	7	22	Right-handed alpha
Helix 28	AD1	B	22	29	Right-handed alpha
Helix 29	AD2	B	49	57	Right-handed alpha
Helix 30	AD3	B	79	86	Right-handed alpha
Helix 31	AD4	B	96	104	Right-handed alpha
Helix 32	AD5	B	115	130	Right-handed alpha
Helix 33	AD6	B	138	153	Right-handed alpha
Helix 34	AD7	B	157	169	Right-handed alpha
Helix 35	AD8	B	193	200	Right-handed alpha
Helix 36	AD9	B	207	217	Right-handed alpha
Helix 37	AE1	B	217	232	Right-handed alpha
Helix 38	AE2	B	246	251	Right-handed alpha
Helix 39	AE3	B	253	258	Right-handed 310
Helix 40	AE4	B	268	277	Right-handed alpha
Helix 41	AE5	B	328	340	Right-handed alpha
Helix 42	AE6	B	392	396	Right-handed 310
Helix 43	AE7	B	397	406	Right-handed alpha
Helix 44	AE8	B	415	417	Right-handed 310
Helix 45	AE9	B	436	439	Right-handed 310
Helix 46	AF1	B	440	456	Right-handed alpha
Helix 47	AF2	B	461	467	Right-handed alpha
Helix 48	AF3	B	469	480	Right-handed alpha
Helix 49	AF4	B	511	515	Right-handed 310
Helix 50	AF5	B	519	521	Right-handed 310
Helix 51	AF6	B	527	537	Right-handed alpha
Helix 52	AF7	B	539	558	Right-handed alpha
Helix 53	AF8	C	8	22	Right-handed alpha
Helix 54	AF9	C	22	29	Right-handed alpha
Helix 55	AG1	C	48	58	Right-handed alpha
Helix 56	AG2	C	79	86	Right-handed alpha
Helix 57	AG3	C	96	103	Right-handed alpha
Helix 58	AG4	C	115	130	Right-handed alpha
Helix 59	AG5	C	138	153	Right-handed alpha
Helix 60	AG6	C	157	162	Right-handed alpha
Helix 61	AG7	C	162	169	Right-handed alpha
Helix 62	AG8	C	193	201	Right-handed alpha
Helix 63	AG9	C	207	217	Right-handed alpha
Helix 64	AH1	C	217	232	Right-handed alpha
Helix 65	AH2	C	246	251	Right-handed alpha
Helix 66	AH3	C	253	258	Right-handed 310
Helix 67	AH4	C	268	277	Right-handed alpha
Helix 68	AH5	C	328	340	Right-handed alpha
Helix 69	AH6	C	392	396	Right-handed 310
Helix 70	AH7	C	397	406	Right-handed alpha
Helix 71	AH8	C	415	417	Right-handed 310
Helix 72	AH9	C	419	423	Right-handed 310
Helix 73	AI1	C	436	438	Right-handed 310
Helix 74	AI2	C	439	456	Right-handed alpha
Helix 75	AI3	C	461	467	Right-handed alpha
Helix 76	AI4	C	469	481	Right-handed alpha
Helix 77	AI5	C	511	515	Right-handed 310
Helix 78	AI6	C	519	521	Right-handed 310
Helix 79	AI7	C	527	537	Right-handed alpha
Helix 80	AI8	C	539	558	Right-handed alpha
Helix 81	AI9	D	10	22	Right-handed alpha
Helix 82	AJ1	D	49	58	Right-handed alpha
Helix 83	AJ2	D	78	86	Right-handed alpha
Helix 84	AJ3	D	96	104	Right-handed alpha
Helix 85	AJ4	D	115	130	Right-handed alpha
Helix 86	AJ5	D	137	153	Right-handed alpha
Helix 87	AJ6	D	157	169	Right-handed alpha
Helix 88	AJ7	D	207	217	Right-handed alpha
Helix 89	AJ8	D	217	232	Right-handed alpha
Helix 90	AJ9	D	246	251	Right-handed alpha
Helix 91	AK1	D	253	258	Right-handed 310
Helix 92	AK2	D	268	277	Right-handed alpha
Helix 93	AK3	D	328	340	Right-handed alpha
Helix 94	AK4	D	392	396	Right-handed 310
Helix 95	AK5	D	397	404	Right-handed alpha
Helix 96	AK6	D	440	456	Right-handed alpha
Helix 97	AK7	D	461	467	Right-handed alpha
Helix 98	AK8	D	469	481	Right-handed alpha
Helix 99	AK9	D	511	515	Right-handed 310
Helix 100	AL1	D	519	521	Right-handed 310
Helix 101	AL2	D	527	537	Right-handed alpha
Helix 102	AL3	D	539	558	Right-handed alpha
Helix 103	AL4	E	11	20	Right-handed alpha
Helix 104	AL5	E	49	59	Right-handed alpha
Helix 105	AL6	E	77	86	Right-handed alpha
Helix 106	AL7	E	96	103	Right-handed alpha
Helix 107	AL8	E	115	130	Right-handed alpha
Helix 108	AL9	E	137	152	Right-handed alpha
Helix 109	AM1	E	157	162	Right-handed alpha
Helix 110	AM2	E	162	169	Right-handed alpha
Helix 111	AM3	E	193	201	Right-handed alpha
Helix 112	AM4	E	207	217	Right-handed alpha
Helix 113	AM5	E	217	233	Right-handed alpha
Helix 114	AM6	E	246	251	Right-handed alpha
Helix 115	AM7	E	253	258	Right-handed 310
Helix 116	AM8	E	268	277	Right-handed alpha
Helix 117	AM9	E	328	340	Right-handed alpha
Helix 118	AN1	E	392	396	Right-handed 310
Helix 119	AN2	E	397	405	Right-handed alpha
Helix 120	AN3	E	415	417	Right-handed 310
Helix 121	AN4	E	436	439	Right-handed 310
Helix 122	AN5	E	440	456	Right-handed alpha
Helix 123	AN6	E	461	467	Right-handed alpha
Helix 124	AN7	E	469	481	Right-handed alpha
Helix 125	AN8	E	511	515	Right-handed 310
Helix 126	AN9	E	519	521	Right-handed 310
Helix 127	AO1	E	527	537	Right-handed alpha
Helix 128	AO2	E	539	558	Right-handed alpha
Helix 129	AO3	F	96	103	Right-handed alpha
Helix 130	AO4	F	115	130	Right-handed alpha
Helix 131	AO5	F	138	153	Right-handed alpha
Helix 132	AO6	F	157	169	Right-handed alpha
Helix 133	AO7	F	193	201	Right-handed alpha
Helix 134	AO8	F	207	217	Right-handed alpha
Helix 135	AO9	F	217	232	Right-handed alpha
Helix 136	AP1	F	239	244	Right-handed alpha
Helix 137	AP2	F	246	251	Right-handed alpha
Helix 138	AP3	F	253	258	Right-handed 310
Helix 139	AP4	F	268	277	Right-handed alpha
Helix 140	AP5	F	328	340	Right-handed alpha
Helix 141	AP6	F	392	396	Right-handed 310
Helix 142	AP7	F	397	406	Right-handed alpha
Helix 143	AP8	F	415	417	Right-handed 310
Helix 144	AP9	F	419	423	Right-handed 310
Helix 145	AQ1	F	440	456	Right-handed alpha
Helix 146	AQ2	F	461	467	Right-handed alpha
Helix 147	AQ3	F	469	481	Right-handed alpha
Helix 148	AQ4	F	511	515	Right-handed 310
Helix 149	AQ5	F	519	521	Right-handed 310
Helix 150	AQ6	F	527	537	Right-handed alpha
Helix 151	AQ7	F	539	558	Right-handed alpha

There are 26 sheets in PDB entry 5ZMM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	45	48	first strand
Strand 2	A	38	42	anti-parallel
Strand 3	A	89	92	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	135	137	first strand
Strand 2	A	203	206	anti-parallel
Strand 3	A	175	177	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	265	266	first strand
Strand 2	A	354	371	anti-parallel
Strand 3	A	377	388	anti-parallel
Strand 4	A	313	316	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	284	286	first strand
Strand 2	A	292	297	anti-parallel
Strand 3	A	342	348	parallel
Strand 4	A	354	371	anti-parallel
Strand 5	A	412	413	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	505	508	first strand
Strand 2	A	523	526	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	45	48	first strand
Strand 2	B	38	42	anti-parallel
Strand 3	B	89	92	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	135	137	first strand
Strand 2	B	203	205	anti-parallel
Strand 3	B	176	177	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	265	266	first strand
Strand 2	B	354	371	anti-parallel
Strand 3	B	377	388	anti-parallel
Strand 4	B	313	316	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	285	286	first strand
Strand 2	B	292	297	anti-parallel
Strand 3	B	342	348	parallel
Strand 4	B	354	371	anti-parallel
Strand 5	B	412	413	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	505	508	first strand
Strand 2	B	523	526	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	135	137	first strand
Strand 2	C	203	206	anti-parallel
Strand 3	C	175	176	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	265	266	first strand
Strand 2	C	354	371	anti-parallel
Strand 3	C	377	388	anti-parallel
Strand 4	C	313	316	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	285	286	first strand
Strand 2	C	292	297	anti-parallel
Strand 3	C	343	348	parallel
Strand 4	C	354	371	anti-parallel
Strand 5	C	412	413	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	505	508	first strand
Strand 2	C	523	526	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	45	48	first strand
Strand 2	D	39	42	anti-parallel
Strand 3	D	90	91	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	265	266	first strand
Strand 2	D	354	371	anti-parallel
Strand 3	D	342	348	anti-parallel
Strand 4	D	292	297	parallel
Strand 5	D	284	286	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	265	266	first strand
Strand 2	D	354	371	anti-parallel
Strand 3	D	377	388	anti-parallel
Strand 4	D	313	316	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	505	508	first strand
Strand 2	D	523	526	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	45	48	first strand
Strand 2	E	38	42	anti-parallel
Strand 3	E	89	92	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	265	266	first strand
Strand 2	E	354	371	anti-parallel
Strand 3	E	377	388	anti-parallel
Strand 4	E	313	316	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	285	286	first strand
Strand 2	E	292	297	anti-parallel
Strand 3	E	342	348	parallel
Strand 4	E	354	371	anti-parallel
Strand 5	E	412	413	parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	505	508	first strand
Strand 2	E	523	526	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	135	137	first strand
Strand 2	F	203	205	anti-parallel
Strand 3	F	176	177	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	265	266	first strand
Strand 2	F	354	371	anti-parallel
Strand 3	F	377	388	anti-parallel
Strand 4	F	313	316	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	284	286	first strand
Strand 2	F	292	297	anti-parallel
Strand 3	F	342	348	parallel
Strand 4	F	354	371	anti-parallel
Strand 5	F	412	413	parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	505	508	first strand
Strand 2	F	523	526	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5ZMM

Analysis of interatomic Contacts of Structural Units in PDB entry:
5ZMM