Analysis of interatomic Contacts of Structural Units in PDB entry:
5ZMN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5ZMN entry

There are 5 chains in PDB entry 5ZMN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 95TYR 418
B
 C 1 G 4
B
 C 6 G 10
C
 C 1 G 4
C
 C 6 G 10
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 5ZMN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
96 104Right-handed alpha
Helix 2
AA2
A
115 130Right-handed alpha
Helix 3
AA3
A
138 153Right-handed alpha
Helix 4
AA4
A
157 162Right-handed alpha
Helix 5
AA5
A
162 169Right-handed alpha
Helix 6
AA6
A
193 200Right-handed alpha
Helix 7
AA7
A
207 217Right-handed alpha
Helix 8
AA8
A
217 233Right-handed alpha
Helix 9
AA9
A
237 245Right-handed alpha
Helix 10
AB1
A
246 251Right-handed alpha
Helix 11
AB2
A
253 258Right-handed 310
Helix 12
AB3
A
268 277Right-handed alpha
Helix 13
AB4
A
328 340Right-handed alpha
Helix 14
AB5
A
392 396Right-handed 310
Helix 15
AB6
A
397 407Right-handed alpha
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There are 3 sheets in PDB entry 5ZMN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
135 137first strand
Strand 2
A
203 206anti-parallel
Strand 3
A
175 177anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
265 266first strand
Strand 2
A
354 371anti-parallel
Strand 3
A
377 388anti-parallel
Strand 4
A
313 316anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
284 286first strand
Strand 2
A
292 297anti-parallel
Strand 3
A
342 348parallel
Strand 4
A
354 371anti-parallel
Strand 5
A
412 413parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il