Analysis of interatomic Contacts of Structural Units in PDB entry:
5ZNJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5ZNJ entry

There is 1 chain in PDB entry 5ZNJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LYS 567
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 5ZNJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 6Right-handed 310
Helix 2
AA2
A
20 29Right-handed alpha
Helix 3
AA3
A
43 64Right-handed alpha
Helix 4
AA4
A
77 84Right-handed alpha
Helix 5
AA5
A
84 89Right-handed alpha
Helix 6
AA6
A
110 119Right-handed alpha
Helix 7
AA7
A
124 128Right-handed 310
Helix 8
AA8
A
147 152Right-handed 310
Helix 9
AA9
A
166 188Right-handed alpha
Helix 10
AB1
A
262 271Right-handed alpha
Helix 11
AB2
A
273 276Right-handed 310
Helix 12
AB3
A
301 310Right-handed alpha
Helix 13
AB4
A
318 326Right-handed alpha
Helix 14
AB5
A
348 352Right-handed 310
Helix 15
AB6
A
415 421Right-handed alpha
Helix 16
AB7
A
444 455Right-handed alpha
Helix 17
AB8
A
481 496Right-handed alpha
Helix 18
AB9
A
509 521Right-handed alpha
Helix 19
AC1
A
531 534Right-handed 310
Helix 20
AC2
A
552 565Right-handed alpha
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There are 8 sheets in PDB entry 5ZNJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 36first strand
Strand 2
A
39 42anti-parallel
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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
67 68first strand
Strand 2
A
130 139parallel
Strand 3
A
154 164anti-parallel
Strand 4
A
436 443anti-parallel
Strand 5
A
400 414anti-parallel
Strand 6
A
219 223anti-parallel
Strand 7
A
230 232anti-parallel
Strand 8
A
192 196parallel
Strand 9
A
207 213anti-parallel
Strand 10
A
400 414anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
74 76first strand
Strand 2
A
103 106anti-parallel
Strand 3
A
95 97anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
253 256first strand
Strand 2
A
364 369anti-parallel
Strand 3
A
355 358anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
314 316first strand
Strand 2
A
278 285anti-parallel
Strand 3
A
288 295anti-parallel
Strand 4
A
342 346parallel
Strand 5
A
379 381parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
424 426first strand
Strand 2
A
432 434anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
456 457first strand
Strand 2
A
460 461anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
501 504first strand
Strand 2
A
472 476parallel
Strand 3
A
524 528parallel
Strand 4
A
536 541anti-parallel
Strand 5
A
547 551anti-parallel
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