Analysis of interatomic Contacts of Structural Units in PDB entry:
5ZNM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5ZNM entry

There are 2 chains in PDB entry 5ZNM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 311LEU 697
B
 MET 311LEU 697
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 5ZNM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
312 333Right-handed alpha
Helix 2
AA2
A
341 353Right-handed alpha
Helix 3
AA3
A
384 387Right-handed 310
Helix 4
AA4
A
388 397Right-handed alpha
Helix 5
AA5
A
443 446Right-handed 310
Helix 6
AA6
A
565 569Right-handed 310
Helix 7
AA7
A
601 608Right-handed alpha
Helix 8
AA8
A
609 616Right-handed 310
Helix 9
AA9
A
623 640Right-handed alpha
Helix 10
AB1
A
685 695Right-handed alpha
Helix 11
AB2
B
312 333Right-handed alpha
Helix 12
AB3
B
341 353Right-handed alpha
Helix 13
AB4
B
386 397Right-handed alpha
Helix 14
AB5
B
443 445Right-handed 310
Helix 15
AB6
B
601 608Right-handed alpha
Helix 16
AB7
B
609 616Right-handed 310
Helix 17
AB8
B
623 640Right-handed alpha
Helix 18
AB9
B
685 695Right-handed alpha
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There are 9 sheets in PDB entry 5ZNM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
359 361first strand
Strand 2
A
517 522parallel
Strand 3
A
504 508anti-parallel
Strand 4
A
496 497anti-parallel
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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
572 577first strand
Strand 2
A
584 591anti-parallel
Strand 3
A
436 441anti-parallel
Strand 4
A
366 371anti-parallel
Strand 5
A
375 381anti-parallel
Strand 6
B
375 381anti-parallel
Strand 7
B
366 371anti-parallel
Strand 8
B
436 441anti-parallel
Strand 9
B
584 591anti-parallel
Strand 10
B
571 577anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
463 470first strand
Strand 2
A
473 480anti-parallel
Strand 3
A
406 413anti-parallel
Strand 4
A
553 554anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
458 460first strand
Strand 2
A
489 491anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
644 645first strand
Strand 2
A
656 659anti-parallel
Strand 3
A
665 669anti-parallel
Strand 4
A
675 680anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
359 361first strand
Strand 2
B
517 522parallel
Strand 3
B
504 508anti-parallel
Strand 4
B
496 497anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
463 470first strand
Strand 2
B
473 480anti-parallel
Strand 3
B
406 413anti-parallel
Strand 4
B
553 554anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
458 460first strand
Strand 2
B
489 491anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
644 645first strand
Strand 2
B
656 659anti-parallel
Strand 3
B
665 669anti-parallel
Strand 4
B
675 680anti-parallel
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