Analysis of interatomic Contacts of Structural Units in PDB entry:
5ZNN

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5ZNN entry

There are 2 chains in PDB entry 5ZNN (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 83	CYS 738
B	ASP 83	ASN 726

There are 20 helices in PDB entry 5ZNN. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	90	96	Right-handed alpha
Helix 2	AA2	A	156	160	Right-handed 310
Helix 3	AA3	A	462	468	Right-handed alpha
Helix 4	AA4	A	494	500	Right-handed alpha
Helix 5	AA5	A	527	530	Right-handed 310
Helix 6	AA6	A	611	613	Right-handed 310
Helix 7	AA7	A	626	630	Right-handed 310
Helix 8	AA8	A	667	669	Right-handed 310
Helix 9	AA9	A	690	693	Right-handed 310
Helix 10	AB1	B	90	96	Right-handed alpha
Helix 11	AB2	B	156	160	Right-handed 310
Helix 12	AB3	B	261	263	Right-handed 310
Helix 13	AB4	B	444	450	Right-handed alpha
Helix 14	AB5	B	462	468	Right-handed alpha
Helix 15	AB6	B	494	500	Right-handed alpha
Helix 16	AB7	B	527	530	Right-handed 310
Helix 17	AB8	B	611	613	Right-handed 310
Helix 18	AB9	B	626	630	Right-handed 310
Helix 19	AC1	B	667	669	Right-handed 310
Helix 20	AC2	B	690	693	Right-handed 310

There are 28 sheets in PDB entry 5ZNN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	98	103	first strand
Strand 2	A	594	601	anti-parallel
Strand 3	A	580	587	anti-parallel
Strand 4	A	566	572	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	109	114	first strand
Strand 2	A	122	128	anti-parallel
Strand 3	A	162	165	parallel
Strand 4	A	180	186	anti-parallel
Strand 5	A	170	172	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	153	154	first strand
Strand 2	A	142	145	anti-parallel
Strand 3	A	122	128	anti-parallel
Strand 4	A	162	165	parallel
Strand 5	A	180	186	anti-parallel
Strand 6	A	194	198	anti-parallel
Strand 7	A	206	209	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	219	221	first strand
Strand 2	A	224	231	anti-parallel
Strand 3	A	237	240	anti-parallel
Strand 4	A	248	251	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	254	259	first strand
Strand 2	A	265	269	anti-parallel
Strand 3	A	282	287	anti-parallel
Strand 4	A	295	307	anti-parallel
Strand 5	A	310	316	anti-parallel
Strand 6	A	323	328	anti-parallel
Strand 7	A	336	337	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	349	354	first strand
Strand 2	A	359	364	anti-parallel
Strand 3	A	371	377	anti-parallel
Strand 4	A	384	392	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	403	404	first strand
Strand 2	A	412	417	anti-parallel
Strand 3	A	423	428	anti-parallel
Strand 4	A	435	437	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	459	460	first strand
Strand 2	A	486	491	anti-parallel
Strand 3	A	502	506	anti-parallel
Strand 4	A	514	517	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	521	526	first strand
Strand 2	A	531	536	anti-parallel
Strand 3	A	544	548	anti-parallel
Strand 4	A	556	559	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	615	618	first strand
Strand 2	A	640	643	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	632	633	first strand
Strand 2	A	636	637	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	671	673	first strand
Strand 2	A	713	715	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	677	678	first strand
Strand 2	A	687	688	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	697	701	first strand
Strand 2	A	704	710	anti-parallel
Strand 3	A	729	737	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	98	103	first strand
Strand 2	B	594	601	anti-parallel
Strand 3	B	580	587	anti-parallel
Strand 4	B	566	572	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	109	115	first strand
Strand 2	B	121	128	anti-parallel
Strand 3	B	162	165	parallel
Strand 4	B	180	186	anti-parallel
Strand 5	B	170	172	anti-parallel

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There are 7 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	153	154	first strand
Strand 2	B	142	145	anti-parallel
Strand 3	B	121	128	anti-parallel
Strand 4	B	162	165	parallel
Strand 5	B	180	186	anti-parallel
Strand 6	B	194	198	anti-parallel
Strand 7	B	206	209	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	219	221	first strand
Strand 2	B	224	231	anti-parallel
Strand 3	B	237	240	anti-parallel
Strand 4	B	247	251	anti-parallel

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There are 7 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	254	259	first strand
Strand 2	B	265	269	anti-parallel
Strand 3	B	282	287	anti-parallel
Strand 4	B	295	307	anti-parallel
Strand 5	B	310	316	anti-parallel
Strand 6	B	323	328	anti-parallel
Strand 7	B	336	337	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	349	354	first strand
Strand 2	B	359	364	anti-parallel
Strand 3	B	371	377	anti-parallel
Strand 4	B	384	392	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	403	404	first strand
Strand 2	B	412	417	anti-parallel
Strand 3	B	423	428	anti-parallel
Strand 4	B	435	437	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	459	460	first strand
Strand 2	B	486	491	anti-parallel
Strand 3	B	502	506	anti-parallel
Strand 4	B	514	517	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	521	526	first strand
Strand 2	B	531	536	anti-parallel
Strand 3	B	544	548	anti-parallel
Strand 4	B	556	559	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	615	618	first strand
Strand 2	B	640	643	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	632	633	first strand
Strand 2	B	636	637	anti-parallel
Strand 3	B	662	663	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	671	673	first strand
Strand 2	B	713	715	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	677	678	first strand
Strand 2	B	687	688	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	697	701	first strand
Strand 2	B	704	710	anti-parallel
Strand 3	B	729	737	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5ZNN

Analysis of interatomic Contacts of Structural Units in PDB entry:
5ZNN