Analysis of interatomic Contacts of Structural Units in PDB entry:
5ZOD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5ZOD entry

There is 1 chain in PDB entry 5ZOD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 2SER 331
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 5ZOD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
5 14Right-handed alpha
Helix 2
AA2
A
22 27Right-handed 310
Helix 3
AA3
A
64 77Right-handed alpha
Helix 4
AA4
A
139 149Right-handed alpha
Helix 5
AA5
A
158 169Right-handed alpha
Helix 6
AA6
A
180 185Right-handed alpha
Helix 7
AA7
A
197 201Right-handed 310
Helix 8
AA8
A
209 217Right-handed alpha
Helix 9
AA9
A
219 231Right-handed alpha
Helix 10
AB1
A
242 254Right-handed alpha
Helix 11
AB2
A
255 263Right-handed alpha
Helix 12
AB3
A
275 285Right-handed alpha
Helix 13
AB4
A
302 312Right-handed alpha
Helix 14
AB5
A
317 331Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 5ZOD.

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
18 21first strand
Strand 2
A
204 208anti-parallel
Strand 3
A
189 192anti-parallel
Strand 4
A
174 176parallel
Strand 5
A
30 34parallel
Strand 6
A
80 85parallel
Strand 7
A
152 154parallel
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