Analysis of interatomic Contacts of Structural Units in PDB entry:
5ZOI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5ZOI entry

There are 2 chains in PDB entry 5ZOI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1PHE 352
B
 MET 1PHE 352
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 5ZOI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1 13Right-handed alpha
Helix 2
AA2
A
35 45Right-handed alpha
Helix 3
AA3
A
45 52Right-handed alpha
Helix 4
AA4
A
115 119Right-handed 310
Helix 5
AA5
A
126 132Right-handed alpha
Helix 6
AA6
A
166 171Right-handed alpha
Helix 7
AA7
A
192 204Right-handed alpha
Helix 8
AA8
A
224 230Right-handed alpha
Helix 9
AA9
A
249 256Right-handed alpha
Helix 10
AB1
A
268 273Right-handed alpha
Helix 11
AB2
A
287 296Right-handed alpha
Helix 12
AB3
A
300 309Right-handed alpha
Helix 13
AB4
A
322 326Right-handed 310
Helix 14
AB5
A
327 341Right-handed alpha
Helix 15
AB6
B
2 13Right-handed alpha
Helix 16
AB7
B
35 45Right-handed alpha
Helix 17
AB8
B
47 52Right-handed alpha
Helix 18
AB9
B
115 119Right-handed 310
Helix 19
AC1
B
123 126Right-handed 310
Helix 20
AC2
B
127 133Right-handed alpha
Helix 21
AC3
B
159 164Right-handed alpha
Helix 22
AC4
B
164 173Right-handed alpha
Helix 23
AC5
B
176 180Right-handed 310
Helix 24
AC6
B
193 204Right-handed alpha
Helix 25
AC7
B
224 229Right-handed alpha
Helix 26
AC8
B
249 256Right-handed alpha
Helix 27
AC9
B
268 273Right-handed alpha
Helix 28
AD1
B
289 298Right-handed alpha
Helix 29
AD2
B
301 307Right-handed alpha
Helix 30
AD3
B
322 326Right-handed 310
Helix 31
AD4
B
327 339Right-handed alpha
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There are 9 sheets in PDB entry 5ZOI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 60first strand
Strand 2
A
25 29parallel
Strand 3
A
69 70parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
108 109first strand
Strand 2
A
120 121parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
208 210first strand
Strand 2
A
181 185parallel
Strand 3
A
232 235parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
262 263first strand
Strand 2
A
279 280parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
315 316first strand
Strand 2
A
319 320anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
58 60first strand
Strand 2
B
27 29parallel
Strand 3
B
69 70parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
90 92first strand
Strand 2
B
106 108parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
208 210first strand
Strand 2
B
181 185parallel
Strand 3
B
232 235parallel
Strand 4
B
260 263parallel
Strand 5
B
279 280parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
315 316first strand
Strand 2
B
319 320anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il