Analysis of interatomic Contacts of Structural Units in PDB entry:
5ZOJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5ZOJ entry

There are 5 chains in PDB entry 5ZOJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 270	MET 456
B	ALA 272	MET 456
C	PRO 271	MET 456
D	SER 762	SER 888
E	SER 762	SER 888

There are 29 helices in PDB entry 5ZOJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	322	331	Right-handed alpha
Helix 2	AA2	A	359	367	Right-handed alpha
Helix 3	AA3	A	387	399	Right-handed alpha
Helix 4	AA4	A	401	407	Right-handed alpha
Helix 5	AA5	A	408	411	Right-handed 310
Helix 6	AA6	A	430	434	Right-handed 310
Helix 7	AA7	A	443	456	Right-handed alpha
Helix 8	AA8	B	322	331	Right-handed alpha
Helix 9	AA9	B	359	367	Right-handed alpha
Helix 10	AB1	B	387	399	Right-handed alpha
Helix 11	AB2	B	401	407	Right-handed alpha
Helix 12	AB3	B	408	411	Right-handed 310
Helix 13	AB4	B	430	434	Right-handed 310
Helix 14	AB5	B	443	456	Right-handed alpha
Helix 15	AB6	C	322	331	Right-handed alpha
Helix 16	AB7	C	359	366	Right-handed alpha
Helix 17	AB8	C	387	398	Right-handed alpha
Helix 18	AB9	C	401	407	Right-handed alpha
Helix 19	AC1	C	408	411	Right-handed 310
Helix 20	AC2	C	430	434	Right-handed 310
Helix 21	AC3	C	443	456	Right-handed alpha
Helix 22	AC4	D	793	797	Right-handed 310
Helix 23	AC5	D	802	814	Right-handed alpha
Helix 24	AC6	D	840	852	Right-handed alpha
Helix 25	AC7	D	867	875	Right-handed alpha
Helix 26	AC8	D	876	881	Right-handed 310
Helix 27	AC9	E	793	797	Right-handed 310
Helix 28	AD1	E	801	814	Right-handed alpha
Helix 29	AD2	E	840	852	Right-handed alpha

There are 11 sheets in PDB entry 5ZOJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	284	285	first strand
Strand 2	A	275	281	anti-parallel
Strand 3	A	290	291	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	284	285	first strand
Strand 2	A	275	281	anti-parallel
Strand 3	A	437	442	anti-parallel
Strand 4	A	413	418	anti-parallel
Strand 5	A	355	358	anti-parallel
Strand 6	A	374	376	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	310	312	first strand
Strand 2	A	296	300	parallel
Strand 3	A	336	341	anti-parallel
Strand 4	A	344	349	anti-parallel
Strand 5	A	381	386	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	284	285	first strand
Strand 2	B	275	281	anti-parallel
Strand 3	B	290	292	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	284	285	first strand
Strand 2	B	275	281	anti-parallel
Strand 3	B	437	442	anti-parallel
Strand 4	B	413	418	anti-parallel
Strand 5	B	355	358	anti-parallel
Strand 6	B	374	376	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	310	312	first strand
Strand 2	B	296	300	parallel
Strand 3	B	336	341	anti-parallel
Strand 4	B	344	349	anti-parallel
Strand 5	B	381	386	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	284	285	first strand
Strand 2	C	275	281	anti-parallel
Strand 3	C	290	292	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	284	285	first strand
Strand 2	C	275	281	anti-parallel
Strand 3	C	437	442	anti-parallel
Strand 4	C	413	418	anti-parallel
Strand 5	C	355	358	anti-parallel
Strand 6	C	374	376	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	310	312	first strand
Strand 2	C	296	300	parallel
Strand 3	C	336	341	anti-parallel
Strand 4	C	344	349	anti-parallel
Strand 5	C	381	386	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	765	768	first strand
Strand 2	D	854	856	anti-parallel
Strand 3	D	859	865	anti-parallel
Strand 4	D	785	789	anti-parallel
Strand 5	D	834	838	anti-parallel
Strand 6	D	820	825	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	765	768	first strand
Strand 2	E	854	856	anti-parallel
Strand 3	E	859	865	anti-parallel
Strand 4	E	785	789	anti-parallel
Strand 5	E	834	838	anti-parallel
Strand 6	E	820	825	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5ZOJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
5ZOJ