Analysis of interatomic Contacts of Structural Units in PDB entry:
5ZOP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5ZOP entry

There are 2 chains in PDB entry 5ZOP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
G	PHE 652	ASN 1050
A	GLU 7	TYR 18

There are 19 helices in PDB entry 5ZOP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	G	659	665	Right-handed 310
Helix 2	AA2	G	671	675	Right-handed 310
Helix 3	AA3	G	679	692	Right-handed alpha
Helix 4	AA4	G	693	698	Right-handed alpha
Helix 5	AA5	G	707	712	Right-handed alpha
Helix 6	AA6	G	716	725	Right-handed alpha
Helix 7	AA7	G	766	787	Right-handed alpha
Helix 8	AA8	G	816	830	Right-handed alpha
Helix 9	AA9	G	844	851	Right-handed alpha
Helix 10	AB1	G	882	886	Right-handed 310
Helix 11	AB2	G	903	914	Right-handed alpha
Helix 12	AB3	G	914	923	Right-handed alpha
Helix 13	AB4	G	940	944	Right-handed 310
Helix 14	AB5	G	949	961	Right-handed alpha
Helix 15	AB6	G	962	966	Right-handed 310
Helix 16	AB7	G	977	993	Right-handed alpha
Helix 17	AB8	G	1001	1007	Right-handed alpha
Helix 18	AB9	G	1010	1025	Right-handed alpha
Helix 19	AC1	G	1041	1049	Right-handed alpha

There are 2 sheets in PDB entry 5ZOP. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	699	701	first strand
Strand 2	G	654	657	parallel
Strand 3	G	792	795	parallel
Strand 4	G	968	972	parallel
Strand 5	G	926	931	parallel
Strand 6	G	834	838	parallel
Strand 7	G	857	864	parallel
Strand 8	G	889	894	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	747	748	first strand
Strand 2	G	754	755	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5ZOP

Analysis of interatomic Contacts of Structural Units in PDB entry:
5ZOP