Analysis of interatomic Contacts of Structural Units in PDB entry:
5ZPR

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5ZPR entry

There are 4 chains in PDB entry 5ZPR (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 9	ASN 381
A	ASP 383	ASN 628
B	ALA 9	ASN 381
B	ASP 383	ASN 628

There are 34 helices in PDB entry 5ZPR. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	16	30	Right-handed alpha
Helix 2	AA2	A	91	96	Right-handed alpha
Helix 3	AA3	A	101	105	Right-handed 310
Helix 4	AA4	A	106	113	Right-handed alpha
Helix 5	AA5	A	115	125	Right-handed alpha
Helix 6	AA6	A	128	130	Right-handed 310
Helix 7	AA7	A	144	148	Right-handed 310
Helix 8	AA8	A	166	170	Right-handed 310
Helix 9	AA9	A	206	211	Right-handed alpha
Helix 10	AB1	A	297	303	Right-handed alpha
Helix 11	AB2	A	304	308	Right-handed 310
Helix 12	AB3	A	479	482	Right-handed 310
Helix 13	AB4	A	488	492	Right-handed 310
Helix 14	AB5	A	528	534	Right-handed alpha
Helix 15	AB6	A	535	539	Right-handed 310
Helix 16	AB7	A	566	572	Right-handed alpha
Helix 17	AB8	A	595	599	Right-handed 310
Helix 18	AB9	B	16	30	Right-handed alpha
Helix 19	AC1	B	91	96	Right-handed alpha
Helix 20	AC2	B	101	105	Right-handed 310
Helix 21	AC3	B	106	113	Right-handed alpha
Helix 22	AC4	B	115	125	Right-handed alpha
Helix 23	AC5	B	128	130	Right-handed 310
Helix 24	AC6	B	144	148	Right-handed 310
Helix 25	AC7	B	166	169	Right-handed 310
Helix 26	AC8	B	206	211	Right-handed alpha
Helix 27	AC9	B	297	303	Right-handed alpha
Helix 28	AD1	B	304	308	Right-handed 310
Helix 29	AD2	B	479	482	Right-handed 310
Helix 30	AD3	B	488	492	Right-handed 310
Helix 31	AD4	B	528	534	Right-handed alpha
Helix 32	AD5	B	535	539	Right-handed 310
Helix 33	AD6	B	566	572	Right-handed alpha
Helix 34	AD7	B	595	599	Right-handed 310

There are 14 sheets in PDB entry 5ZPR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	37	44	first strand
Strand 2	A	59	66	anti-parallel
Strand 3	A	73	78	anti-parallel
Strand 4	A	83	89	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	132	138	first strand
Strand 2	A	152	159	anti-parallel
Strand 3	A	175	180	anti-parallel
Strand 4	A	185	191	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	231	233	first strand
Strand 2	A	237	240	anti-parallel
Strand 3	A	243	250	anti-parallel
Strand 4	A	254	264	anti-parallel
Strand 5	A	267	283	anti-parallel
Strand 6	A	295	296	anti-parallel

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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	231	233	first strand
Strand 2	A	237	240	anti-parallel
Strand 3	A	243	250	anti-parallel
Strand 4	A	254	264	anti-parallel
Strand 5	A	267	283	anti-parallel
Strand 6	A	431	441	anti-parallel
Strand 7	A	582	592	anti-parallel
Strand 8	A	541	545	anti-parallel
Strand 9	A	484	485	anti-parallel

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There are 10 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	322	324	first strand
Strand 2	A	342	356	anti-parallel
Strand 3	A	363	379	anti-parallel
Strand 4	A	382	391	anti-parallel
Strand 5	A	396	404	anti-parallel
Strand 6	A	602	614	anti-parallel
Strand 7	A	509	516	anti-parallel
Strand 8	A	494	503	anti-parallel
Strand 9	A	449	457	anti-parallel
Strand 10	A	470	477	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	327	329	first strand
Strand 2	A	335	337	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	409	410	first strand
Strand 2	A	426	429	anti-parallel
Strand 3	A	419	423	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	37	44	first strand
Strand 2	B	59	66	anti-parallel
Strand 3	B	73	78	anti-parallel
Strand 4	B	83	89	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	132	138	first strand
Strand 2	B	152	159	anti-parallel
Strand 3	B	171	180	anti-parallel
Strand 4	B	185	191	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	231	233	first strand
Strand 2	B	237	240	anti-parallel
Strand 3	B	243	250	anti-parallel
Strand 4	B	254	264	anti-parallel
Strand 5	B	267	283	anti-parallel
Strand 6	B	295	296	anti-parallel

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There are 9 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	231	233	first strand
Strand 2	B	237	240	anti-parallel
Strand 3	B	243	250	anti-parallel
Strand 4	B	254	264	anti-parallel
Strand 5	B	267	283	anti-parallel
Strand 6	B	431	441	anti-parallel
Strand 7	B	582	592	anti-parallel
Strand 8	B	541	545	anti-parallel
Strand 9	B	484	485	anti-parallel

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There are 10 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	322	324	first strand
Strand 2	B	342	356	anti-parallel
Strand 3	B	363	379	anti-parallel
Strand 4	B	382	391	anti-parallel
Strand 5	B	396	404	anti-parallel
Strand 6	B	605	614	anti-parallel
Strand 7	B	509	516	anti-parallel
Strand 8	B	494	503	anti-parallel
Strand 9	B	449	457	anti-parallel
Strand 10	B	470	477	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	327	329	first strand
Strand 2	B	335	337	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	409	410	first strand
Strand 2	B	426	429	anti-parallel
Strand 3	B	419	423	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5ZPR

Analysis of interatomic Contacts of Structural Units in PDB entry:
5ZPR