Analysis of interatomic Contacts of Structural Units in PDB entry:
5ZQ4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5ZQ4 entry

There are 4 chains in PDB entry 5ZQ4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 SER 222THR 576
C
 MET 1LEU 73
A
 SER 222THR 576
D
 MET 1ARG 74
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 5ZQ4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
234 248Right-handed alpha
Helix 2
AA2
B
275 299Right-handed alpha
Helix 3
AA3
B
311 315Right-handed 310
Helix 4
AA4
B
316 330Right-handed alpha
Helix 5
AA5
B
342 361Right-handed alpha
Helix 6
AA6
B
361 366Right-handed alpha
Helix 7
AA7
B
372 385Right-handed alpha
Helix 8
AA8
B
393 406Right-handed alpha
Helix 9
AA9
B
407 410Right-handed 310
Helix 10
AB1
B
413 430Right-handed alpha
Helix 11
AB2
B
430 448Right-handed alpha
Helix 12
AB3
B
513 520Right-handed alpha
Helix 13
AB4
B
520 527Right-handed alpha
Helix 14
AB5
B
542 551Right-handed alpha
Helix 15
AB6
B
552 561Right-handed alpha
Helix 16
AB7
B
561 576Right-handed alpha
Helix 17
AB8
C
22 35Right-handed alpha
Helix 18
AB9
C
37 39Right-handed 310
Helix 19
AC1
C
56 60Right-handed 310
Helix 20
AC2
A
234 248Right-handed alpha
Helix 21
AC3
A
275 299Right-handed alpha
Helix 22
AC4
A
311 315Right-handed 310
Helix 23
AC5
A
316 329Right-handed alpha
Helix 24
AC6
A
342 361Right-handed alpha
Helix 25
AC7
A
361 366Right-handed alpha
Helix 26
AC8
A
372 385Right-handed alpha
Helix 27
AC9
A
393 406Right-handed alpha
Helix 28
AD1
A
407 410Right-handed 310
Helix 29
AD2
A
413 430Right-handed alpha
Helix 30
AD3
A
430 448Right-handed alpha
Helix 31
AD4
A
513 519Right-handed alpha
Helix 32
AD5
A
520 527Right-handed alpha
Helix 33
AD6
A
542 551Right-handed alpha
Helix 34
AD7
A
552 561Right-handed alpha
Helix 35
AD8
A
561 576Right-handed alpha
Helix 36
AD9
D
22 35Right-handed alpha
Helix 37
AE1
D
37 39Right-handed 310
Helix 38
AE2
D
56 60Right-handed 310
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There are 8 sheets in PDB entry 5ZQ4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
262 264first strand
Strand 2
B
267 269anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
455 456first strand
Strand 2
B
533 534anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
473 474first strand
Strand 2
B
510 511anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
12 16first strand
Strand 2
C
2 7anti-parallel
Strand 3
C
66 71parallel
Strand 4
C
41 45anti-parallel
Strand 5
C
48 49anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
262 264first strand
Strand 2
A
267 269anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
455 456first strand
Strand 2
A
533 534anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
473 474first strand
Strand 2
A
510 511anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
12 16first strand
Strand 2
D
2 7anti-parallel
Strand 3
D
66 71parallel
Strand 4
D
41 45anti-parallel
Strand 5
D
48 49anti-parallel
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