Analysis of interatomic Contacts of Structural Units in PDB entry:
5ZQ8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5ZQ8 entry

There are 6 chains in PDB entry 5ZQ8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 MET 1ASP 454
A
 MET 1ASP 454
C
 C 743 U 746
C
 G 748 G 754
D
 C 743 U 746
D
 G 748 G 754
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 5ZQ8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
87 108Right-handed alpha
Helix 2
AA2
B
163 180Right-handed alpha
Helix 3
AA3
B
221 233Right-handed alpha
Helix 4
AA4
B
285 301Right-handed alpha
Helix 5
AA5
B
318 323Right-handed alpha
Helix 6
AA6
B
324 326Right-handed 310
Helix 7
AA7
B
335 349Right-handed alpha
Helix 8
AA8
B
360 372Right-handed alpha
Helix 9
AA9
B
388 397Right-handed alpha
Helix 10
AB1
B
409 422Right-handed alpha
Helix 11
AB2
A
87 108Right-handed alpha
Helix 12
AB3
A
163 180Right-handed alpha
Helix 13
AB4
A
221 233Right-handed alpha
Helix 14
AB5
A
285 301Right-handed alpha
Helix 15
AB6
A
318 323Right-handed alpha
Helix 16
AB7
A
324 326Right-handed 310
Helix 17
AB8
A
335 349Right-handed alpha
Helix 18
AB9
A
360 372Right-handed alpha
Helix 19
AC1
A
388 397Right-handed alpha
Helix 20
AC2
A
409 422Right-handed alpha
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There are 8 sheets in PDB entry 5ZQ8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
7 15first strand
Strand 2
B
21 25anti-parallel
Strand 3
B
28 32anti-parallel
Strand 4
B
52 62parallel
Strand 5
B
40 48anti-parallel
Strand 6
B
7 15anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
153 155first strand
Strand 2
B
140 146anti-parallel
Strand 3
B
129 137anti-parallel
Strand 4
B
194 201anti-parallel
Strand 5
B
208 214anti-parallel
Strand 6
B
236 243parallel
Strand 7
B
255 261anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
265 269first strand
Strand 2
B
272 276anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
354 358first strand
Strand 2
B
328 333parallel
Strand 3
B
307 311parallel
Strand 4
B
377 380parallel
Strand 5
B
402 407parallel
Strand 6
B
443 450anti-parallel
Strand 7
B
425 433anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
7 11first strand
Strand 2
A
40 48anti-parallel
Strand 3
A
52 62anti-parallel
Strand 4
A
28 32parallel
Strand 5
A
21 25anti-parallel
Strand 6
A
14 15anti-parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
153 155first strand
Strand 2
A
140 146anti-parallel
Strand 3
A
129 137anti-parallel
Strand 4
A
194 201anti-parallel
Strand 5
A
208 214anti-parallel
Strand 6
A
236 243parallel
Strand 7
A
255 261anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
265 269first strand
Strand 2
A
272 276anti-parallel
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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
354 358first strand
Strand 2
A
328 333parallel
Strand 3
A
307 311parallel
Strand 4
A
377 380parallel
Strand 5
A
402 407parallel
Strand 6
A
443 450anti-parallel
Strand 7
A
425 433anti-parallel
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