Analysis of interatomic Contacts of Structural Units in PDB entry:
5ZQB

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5ZQB entry

There are 4 chains in PDB entry 5ZQB (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 24	LYS 270
B	GLN 24	LYS 270
C	GLN 24	LYS 270
D	GLN 24	LYS 270

There are 36 helices in PDB entry 5ZQB. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	57	59	Right-handed 310
Helix 2	AA2	A	60	74	Right-handed alpha
Helix 3	AA3	A	95	101	Right-handed alpha
Helix 4	AA4	A	107	117	Right-handed alpha
Helix 5	AA5	A	119	132	Right-handed alpha
Helix 6	AA6	A	134	146	Right-handed alpha
Helix 7	AA7	A	170	185	Right-handed alpha
Helix 8	AA8	A	187	193	Right-handed alpha
Helix 9	AA9	A	255	269	Right-handed alpha
Helix 10	AB1	B	57	59	Right-handed 310
Helix 11	AB2	B	60	74	Right-handed alpha
Helix 12	AB3	B	95	101	Right-handed alpha
Helix 13	AB4	B	107	117	Right-handed alpha
Helix 14	AB5	B	119	131	Right-handed alpha
Helix 15	AB6	B	134	146	Right-handed alpha
Helix 16	AB7	B	170	185	Right-handed alpha
Helix 17	AB8	B	187	193	Right-handed alpha
Helix 18	AB9	B	253	269	Right-handed alpha
Helix 19	AC1	C	57	59	Right-handed 310
Helix 20	AC2	C	60	74	Right-handed alpha
Helix 21	AC3	C	95	101	Right-handed alpha
Helix 22	AC4	C	107	117	Right-handed alpha
Helix 23	AC5	C	119	132	Right-handed alpha
Helix 24	AC6	C	134	146	Right-handed alpha
Helix 25	AC7	C	170	185	Right-handed alpha
Helix 26	AC8	C	187	193	Right-handed alpha
Helix 27	AC9	C	255	269	Right-handed alpha
Helix 28	AD1	D	57	59	Right-handed 310
Helix 29	AD2	D	60	74	Right-handed alpha
Helix 30	AD3	D	95	101	Right-handed alpha
Helix 31	AD4	D	107	116	Right-handed alpha
Helix 32	AD5	D	119	132	Right-handed alpha
Helix 33	AD6	D	134	146	Right-handed alpha
Helix 34	AD7	D	170	185	Right-handed alpha
Helix 35	AD8	D	187	193	Right-handed alpha
Helix 36	AD9	D	255	269	Right-handed alpha

There are 16 sheets in PDB entry 5ZQB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	44	48	first strand
Strand 2	A	33	38	anti-parallel
Strand 3	A	242	251	anti-parallel
Strand 4	A	230	239	anti-parallel
Strand 5	A	218	226	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	54	55	first strand
Strand 2	A	168	169	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	82	84	first strand
Strand 2	A	104	106	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	196	198	first strand
Strand 2	A	204	206	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	44	48	first strand
Strand 2	B	33	38	anti-parallel
Strand 3	B	242	251	anti-parallel
Strand 4	B	230	239	anti-parallel
Strand 5	B	218	226	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	54	55	first strand
Strand 2	B	168	169	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	82	84	first strand
Strand 2	B	104	106	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	196	198	first strand
Strand 2	B	204	206	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	44	48	first strand
Strand 2	C	33	38	anti-parallel
Strand 3	C	242	251	anti-parallel
Strand 4	C	230	239	anti-parallel
Strand 5	C	218	226	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	54	55	first strand
Strand 2	C	168	169	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	82	84	first strand
Strand 2	C	104	106	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	196	198	first strand
Strand 2	C	204	206	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	44	48	first strand
Strand 2	D	33	38	anti-parallel
Strand 3	D	242	251	anti-parallel
Strand 4	D	230	239	anti-parallel
Strand 5	D	218	226	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	54	55	first strand
Strand 2	D	168	169	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	82	84	first strand
Strand 2	D	104	106	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	196	198	first strand
Strand 2	D	204	206	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5ZQB

Analysis of interatomic Contacts of Structural Units in PDB entry:
5ZQB