Analysis of interatomic Contacts of Structural Units in PDB entry:
5ZQE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5ZQE entry

There are 8 chains in PDB entry 5ZQE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 24	LYS 270
B	GLN 24	LYS 270
C	PRO 25	LYS 270
D	PRO 25	LYS 270
E	GLN 24	LYS 270
F	GLN 24	LYS 270
G	GLN 24	LYS 270
H	GLN 24	LYS 270

There are 72 helices in PDB entry 5ZQE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	57	59	Right-handed 310
Helix 2	AA2	A	60	74	Right-handed alpha
Helix 3	AA3	A	95	101	Right-handed alpha
Helix 4	AA4	A	107	116	Right-handed alpha
Helix 5	AA5	A	119	132	Right-handed alpha
Helix 6	AA6	A	134	146	Right-handed alpha
Helix 7	AA7	A	170	185	Right-handed alpha
Helix 8	AA8	A	187	193	Right-handed alpha
Helix 9	AA9	A	255	269	Right-handed alpha
Helix 10	AB1	B	57	59	Right-handed 310
Helix 11	AB2	B	60	74	Right-handed alpha
Helix 12	AB3	B	95	101	Right-handed alpha
Helix 13	AB4	B	107	116	Right-handed alpha
Helix 14	AB5	B	119	132	Right-handed alpha
Helix 15	AB6	B	134	146	Right-handed alpha
Helix 16	AB7	B	170	185	Right-handed alpha
Helix 17	AB8	B	187	193	Right-handed alpha
Helix 18	AB9	B	255	269	Right-handed alpha
Helix 19	AC1	C	57	59	Right-handed 310
Helix 20	AC2	C	60	74	Right-handed alpha
Helix 21	AC3	C	95	101	Right-handed alpha
Helix 22	AC4	C	107	117	Right-handed alpha
Helix 23	AC5	C	119	132	Right-handed alpha
Helix 24	AC6	C	134	146	Right-handed alpha
Helix 25	AC7	C	170	185	Right-handed alpha
Helix 26	AC8	C	187	193	Right-handed alpha
Helix 27	AC9	C	255	269	Right-handed alpha
Helix 28	AD1	D	57	59	Right-handed 310
Helix 29	AD2	D	60	74	Right-handed alpha
Helix 30	AD3	D	95	101	Right-handed alpha
Helix 31	AD4	D	107	116	Right-handed alpha
Helix 32	AD5	D	119	132	Right-handed alpha
Helix 33	AD6	D	134	146	Right-handed alpha
Helix 34	AD7	D	170	185	Right-handed alpha
Helix 35	AD8	D	187	193	Right-handed alpha
Helix 36	AD9	D	255	269	Right-handed alpha
Helix 37	AE1	E	57	59	Right-handed 310
Helix 38	AE2	E	60	74	Right-handed alpha
Helix 39	AE3	E	95	101	Right-handed alpha
Helix 40	AE4	E	107	117	Right-handed alpha
Helix 41	AE5	E	119	131	Right-handed alpha
Helix 42	AE6	E	134	146	Right-handed alpha
Helix 43	AE7	E	170	185	Right-handed alpha
Helix 44	AE8	E	187	193	Right-handed alpha
Helix 45	AE9	E	255	269	Right-handed alpha
Helix 46	AF1	F	57	59	Right-handed 310
Helix 47	AF2	F	60	74	Right-handed alpha
Helix 48	AF3	F	95	101	Right-handed alpha
Helix 49	AF4	F	107	117	Right-handed alpha
Helix 50	AF5	F	119	131	Right-handed alpha
Helix 51	AF6	F	134	146	Right-handed alpha
Helix 52	AF7	F	170	185	Right-handed alpha
Helix 53	AF8	F	187	193	Right-handed alpha
Helix 54	AF9	F	255	269	Right-handed alpha
Helix 55	AG1	G	57	59	Right-handed 310
Helix 56	AG2	G	60	74	Right-handed alpha
Helix 57	AG3	G	95	101	Right-handed alpha
Helix 58	AG4	G	107	116	Right-handed alpha
Helix 59	AG5	G	119	132	Right-handed alpha
Helix 60	AG6	G	134	146	Right-handed alpha
Helix 61	AG7	G	170	185	Right-handed alpha
Helix 62	AG8	G	187	193	Right-handed alpha
Helix 63	AG9	G	255	269	Right-handed alpha
Helix 64	AH1	H	57	59	Right-handed 310
Helix 65	AH2	H	60	74	Right-handed alpha
Helix 66	AH3	H	95	101	Right-handed alpha
Helix 67	AH4	H	107	116	Right-handed alpha
Helix 68	AH5	H	119	132	Right-handed alpha
Helix 69	AH6	H	134	146	Right-handed alpha
Helix 70	AH7	H	170	185	Right-handed alpha
Helix 71	AH8	H	187	193	Right-handed alpha
Helix 72	AH9	H	255	269	Right-handed alpha

There are 32 sheets in PDB entry 5ZQE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	43	48	first strand
Strand 2	A	33	38	anti-parallel
Strand 3	A	242	251	anti-parallel
Strand 4	A	230	239	anti-parallel
Strand 5	A	218	226	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	54	55	first strand
Strand 2	A	168	169	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	82	84	first strand
Strand 2	A	104	106	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	196	198	first strand
Strand 2	A	204	206	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	44	48	first strand
Strand 2	B	33	38	anti-parallel
Strand 3	B	242	251	anti-parallel
Strand 4	B	230	239	anti-parallel
Strand 5	B	218	226	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	54	55	first strand
Strand 2	B	168	169	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	82	84	first strand
Strand 2	B	104	106	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	196	198	first strand
Strand 2	B	204	206	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	43	48	first strand
Strand 2	C	33	38	anti-parallel
Strand 3	C	242	251	anti-parallel
Strand 4	C	230	239	anti-parallel
Strand 5	C	218	226	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	54	55	first strand
Strand 2	C	168	169	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	82	84	first strand
Strand 2	C	104	106	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	196	198	first strand
Strand 2	C	204	206	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	44	48	first strand
Strand 2	D	33	38	anti-parallel
Strand 3	D	242	251	anti-parallel
Strand 4	D	230	239	anti-parallel
Strand 5	D	218	226	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	54	55	first strand
Strand 2	D	168	169	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	82	84	first strand
Strand 2	D	104	106	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	196	198	first strand
Strand 2	D	204	206	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	44	48	first strand
Strand 2	E	33	38	anti-parallel
Strand 3	E	242	251	anti-parallel
Strand 4	E	230	239	anti-parallel
Strand 5	E	218	226	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	54	55	first strand
Strand 2	E	168	169	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	82	84	first strand
Strand 2	E	104	106	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	196	198	first strand
Strand 2	E	204	206	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	44	48	first strand
Strand 2	F	33	38	anti-parallel
Strand 3	F	242	251	anti-parallel
Strand 4	F	230	239	anti-parallel
Strand 5	F	218	226	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	54	55	first strand
Strand 2	F	168	169	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	82	84	first strand
Strand 2	F	104	106	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	196	198	first strand
Strand 2	F	204	206	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	44	48	first strand
Strand 2	G	33	38	anti-parallel
Strand 3	G	242	251	anti-parallel
Strand 4	G	230	239	anti-parallel
Strand 5	G	218	226	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	54	55	first strand
Strand 2	G	168	169	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	82	84	first strand
Strand 2	G	104	106	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	196	198	first strand
Strand 2	G	204	206	anti-parallel

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There are 5 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	44	48	first strand
Strand 2	H	33	38	anti-parallel
Strand 3	H	242	251	anti-parallel
Strand 4	H	230	239	anti-parallel
Strand 5	H	218	226	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	54	55	first strand
Strand 2	H	168	169	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	82	84	first strand
Strand 2	H	104	106	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	196	198	first strand
Strand 2	H	204	206	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5ZQE

Analysis of interatomic Contacts of Structural Units in PDB entry:
5ZQE