Analysis of interatomic Contacts of Structural Units in PDB entry:
5ZQK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5ZQK entry

There are 2 chains in PDB entry 5ZQK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 6MET 883
B
 GLU 7MET 883
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 81 helices in PDB entry 5ZQK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 20Right-handed alpha
Helix 2
AA2
A
21 31Right-handed alpha
Helix 3
AA3
A
38 47Right-handed alpha
Helix 4
AA4
A
57 68Right-handed alpha
Helix 5
AA5
A
85 93Right-handed alpha
Helix 6
AA6
A
120 122Right-handed 310
Helix 7
AA7
A
131 135Right-handed 310
Helix 8
AA8
A
153 171Right-handed alpha
Helix 9
AA9
A
187 202Right-handed alpha
Helix 10
AB1
A
227 245Right-handed alpha
Helix 11
AB2
A
273 288Right-handed alpha
Helix 12
AB3
A
322 328Right-handed alpha
Helix 13
AB4
A
329 334Right-handed 310
Helix 14
AB5
A
335 340Right-handed alpha
Helix 15
AB6
A
347 359Right-handed alpha
Helix 16
AB7
A
367 386Right-handed alpha
Helix 17
AB8
A
395 405Right-handed alpha
Helix 18
AB9
A
421 427Right-handed alpha
Helix 19
AC1
A
428 443Right-handed alpha
Helix 20
AC2
A
479 490Right-handed alpha
Helix 21
AC3
A
490 495Right-handed alpha
Helix 22
AC4
A
511 513Right-handed 310
Helix 23
AC5
A
514 524Right-handed alpha
Helix 24
AC6
A
537 542Right-handed 310
Helix 25
AC7
A
543 552Right-handed alpha
Helix 26
AC8
A
553 557Right-handed 310
Helix 27
AC9
A
558 572Right-handed alpha
Helix 28
AD1
A
602 626Right-handed alpha
Helix 29
AD2
A
636 656Right-handed alpha
Helix 30
AD3
A
671 677Right-handed 310
Helix 31
AD4
A
678 684Right-handed alpha
Helix 32
AD5
A
702 706Right-handed 310
Helix 33
AD6
A
730 739Right-handed alpha
Helix 34
AD7
A
747 766Right-handed alpha
Helix 35
AD8
A
769 783Right-handed alpha
Helix 36
AD9
A
808 818Right-handed alpha
Helix 37
AE1
A
832 836Right-handed 310
Helix 38
AE2
A
840 847Right-handed alpha
Helix 39
AE3
A
853 862Right-handed alpha
Helix 40
AE4
A
862 875Right-handed alpha
Helix 41
AE5
B
8 20Right-handed alpha
Helix 42
AE6
B
21 31Right-handed alpha
Helix 43
AE7
B
38 47Right-handed alpha
Helix 44
AE8
B
57 68Right-handed alpha
Helix 45
AE9
B
85 93Right-handed alpha
Helix 46
AF1
B
120 122Right-handed 310
Helix 47
AF2
B
131 135Right-handed 310
Helix 48
AF3
B
153 172Right-handed alpha
Helix 49
AF4
B
187 201Right-handed alpha
Helix 50
AF5
B
227 245Right-handed alpha
Helix 51
AF6
B
273 288Right-handed alpha
Helix 52
AF7
B
322 328Right-handed alpha
Helix 53
AF8
B
329 334Right-handed 310
Helix 54
AF9
B
335 340Right-handed alpha
Helix 55
AG1
B
347 359Right-handed alpha
Helix 56
AG2
B
367 386Right-handed alpha
Helix 57
AG3
B
395 405Right-handed alpha
Helix 58
AG4
B
421 427Right-handed alpha
Helix 59
AG5
B
428 443Right-handed alpha
Helix 60
AG6
B
479 490Right-handed alpha
Helix 61
AG7
B
490 495Right-handed alpha
Helix 62
AG8
B
499 504Right-handed alpha
Helix 63
AG9
B
511 513Right-handed 310
Helix 64
AH1
B
514 524Right-handed alpha
Helix 65
AH2
B
537 542Right-handed 310
Helix 66
AH3
B
543 551Right-handed alpha
Helix 67
AH4
B
552 557Right-handed 310
Helix 68
AH5
B
558 573Right-handed alpha
Helix 69
AH6
B
602 626Right-handed alpha
Helix 70
AH7
B
636 656Right-handed alpha
Helix 71
AH8
B
671 677Right-handed 310
Helix 72
AH9
B
678 684Right-handed alpha
Helix 73
AI1
B
702 706Right-handed 310
Helix 74
AI2
B
730 739Right-handed alpha
Helix 75
AI3
B
747 766Right-handed alpha
Helix 76
AI4
B
769 783Right-handed alpha
Helix 77
AI5
B
808 818Right-handed alpha
Helix 78
AI6
B
832 836Right-handed 310
Helix 79
AI7
B
840 847Right-handed alpha
Helix 80
AI8
B
853 862Right-handed alpha
Helix 81
AI9
B
862 875Right-handed alpha
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There are 14 sheets in PDB entry 5ZQK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 36first strand
Strand 2
A
251 253parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
124 127first strand
Strand 2
A
97 103parallel
Strand 3
A
75 80parallel
Strand 4
A
142 145parallel
Strand 5
A
177 182parallel
Strand 6
A
218 221anti-parallel
Strand 7
A
204 206anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
304 310first strand
Strand 2
A
587 595anti-parallel
Strand 3
A
576 584anti-parallel
Strand 4
A
452 456parallel
Strand 5
A
473 478anti-parallel
Strand 6
A
412 413parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
320 321first strand
Strand 2
A
740 741anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
342 343first strand
Strand 2
A
460 461anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
658 660first strand
Strand 2
A
665 667anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
712 717first strand
Strand 2
A
723 728anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
34 36first strand
Strand 2
B
251 253parallel
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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
124 127first strand
Strand 2
B
97 103parallel
Strand 3
B
75 80parallel
Strand 4
B
142 145parallel
Strand 5
B
177 182parallel
Strand 6
B
218 221anti-parallel
Strand 7
B
204 206anti-parallel
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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
304 310first strand
Strand 2
B
587 595anti-parallel
Strand 3
B
576 584anti-parallel
Strand 4
B
452 456parallel
Strand 5
B
473 478anti-parallel
Strand 6
B
412 413parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
320 321first strand
Strand 2
B
740 741anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
342 343first strand
Strand 2
B
460 461anti-parallel
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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
658 661first strand
Strand 2
B
664 667anti-parallel
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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
712 717first strand
Strand 2
B
723 728anti-parallel
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