Analysis of interatomic Contacts of Structural Units in PDB entry:
5ZQM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5ZQM entry

There is 1 chain in PDB entry 5ZQM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 181GLY 489
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 5ZQM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
188 199Right-handed alpha
Helix 2
AA2
A
207 211Right-handed 310
Helix 3
AA3
A
214 225Right-handed alpha
Helix 4
AA4
A
225 231Right-handed alpha
Helix 5
AA5
A
254 266Right-handed alpha
Helix 6
AA6
A
275 280Right-handed alpha
Helix 7
AA7
A
287 300Right-handed alpha
Helix 8
AA8
A
309 314Right-handed 310
Helix 9
AA9
A
322 338Right-handed alpha
Helix 10
AB1
A
366 371Right-handed alpha
Helix 11
AB2
A
383 395Right-handed alpha
Helix 12
AB3
A
404 412Right-handed alpha
Helix 13
AB4
A
417 436Right-handed alpha
Helix 14
AB5
A
449 453Right-handed 310
Helix 15
AB6
A
458 469Right-handed alpha
Helix 16
AB7
A
474 489Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 5ZQM.

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
200 201first strand
Strand 2
A
269 274anti-parallel
Strand 3
A
303 308parallel
Strand 4
A
353 359parallel
Strand 5
A
244 248parallel
Strand 6
A
375 378parallel
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