Analysis of interatomic Contacts of Structural Units in PDB entry:
5ZQV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5ZQV entry

There are 8 chains in PDB entry 5ZQV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 6	ALA 299
B	LEU 7	ALA 299
C	LYS 6	ALA 299
D	LYS 6	ALA 299
E	THR 61	ASP 81
F	THR 61	ASP 81
G	ARG 62	ASP 81
H	THR 61	ARG 63

There are 47 helices in PDB entry 5ZQV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	8	17	Right-handed alpha
Helix 2	AA2	A	18	20	Right-handed 310
Helix 3	AA3	A	31	49	Right-handed alpha
Helix 4	AA4	A	68	80	Right-handed alpha
Helix 5	AA5	A	99	114	Right-handed alpha
Helix 6	AA6	A	127	132	Right-handed alpha
Helix 7	AA7	A	135	144	Right-handed alpha
Helix 8	AA8	A	145	157	Right-handed alpha
Helix 9	AA9	A	182	189	Right-handed alpha
Helix 10	AB1	A	199	207	Right-handed alpha
Helix 11	AB2	A	228	240	Right-handed alpha
Helix 12	AB3	A	271	275	Right-handed 310
Helix 13	AB4	B	8	19	Right-handed alpha
Helix 14	AB5	B	31	49	Right-handed alpha
Helix 15	AB6	B	68	80	Right-handed alpha
Helix 16	AB7	B	99	114	Right-handed alpha
Helix 17	AB8	B	127	132	Right-handed alpha
Helix 18	AB9	B	135	144	Right-handed alpha
Helix 19	AC1	B	145	157	Right-handed alpha
Helix 20	AC2	B	182	189	Right-handed alpha
Helix 21	AC3	B	199	207	Right-handed alpha
Helix 22	AC4	B	228	239	Right-handed alpha
Helix 23	AC5	B	271	275	Right-handed 310
Helix 24	AC6	C	8	18	Right-handed alpha
Helix 25	AC7	C	31	49	Right-handed alpha
Helix 26	AC8	C	68	80	Right-handed alpha
Helix 27	AC9	C	99	114	Right-handed alpha
Helix 28	AD1	C	127	132	Right-handed alpha
Helix 29	AD2	C	135	144	Right-handed alpha
Helix 30	AD3	C	145	157	Right-handed alpha
Helix 31	AD4	C	182	188	Right-handed alpha
Helix 32	AD5	C	199	204	Right-handed alpha
Helix 33	AD6	C	228	239	Right-handed alpha
Helix 34	AD7	C	271	275	Right-handed 310
Helix 35	AD8	D	8	18	Right-handed alpha
Helix 36	AD9	D	31	49	Right-handed alpha
Helix 37	AE1	D	68	80	Right-handed alpha
Helix 38	AE2	D	99	114	Right-handed alpha
Helix 39	AE3	D	127	132	Right-handed alpha
Helix 40	AE4	D	135	144	Right-handed alpha
Helix 41	AE5	D	145	157	Right-handed alpha
Helix 42	AE6	D	183	189	Right-handed alpha
Helix 43	AE7	D	199	205	Right-handed alpha
Helix 44	AE8	D	228	239	Right-handed alpha
Helix 45	AE9	D	271	275	Right-handed 310
Helix 46	AF1	F	68	71	Right-handed 310
Helix 47	AF2	H	68	70	Right-handed 310

There are 16 sheets in PDB entry 5ZQV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	52	55	first strand
Strand 2	A	162	165	parallel
Strand 3	A	169	172	anti-parallel
Strand 4	A	243	246	parallel
Strand 5	A	263	266	parallel
Strand 6	A	255	258	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	118	120	first strand
Strand 2	A	87	89	parallel
Strand 3	A	59	62	parallel
Strand 4	A	280	285	anti-parallel
Strand 5	A	290	298	anti-parallel
Strand 6	E	65	66	parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	118	120	first strand
Strand 2	A	87	89	parallel
Strand 3	A	59	62	parallel
Strand 4	A	280	285	anti-parallel
Strand 5	A	290	298	anti-parallel
Strand 6	E	75	80	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	208	209	first strand
Strand 2	A	225	227	parallel
Strand 3	A	216	218	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	52	55	first strand
Strand 2	B	162	165	parallel
Strand 3	B	169	171	anti-parallel
Strand 4	B	243	246	parallel
Strand 5	B	263	266	parallel
Strand 6	B	255	258	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	118	120	first strand
Strand 2	B	87	89	parallel
Strand 3	B	59	62	parallel
Strand 4	B	280	285	anti-parallel
Strand 5	B	290	298	anti-parallel
Strand 6	F	65	66	parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	118	120	first strand
Strand 2	B	87	89	parallel
Strand 3	B	59	62	parallel
Strand 4	B	280	285	anti-parallel
Strand 5	B	290	298	anti-parallel
Strand 6	F	75	80	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	208	209	first strand
Strand 2	B	225	227	parallel
Strand 3	B	216	218	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	52	55	first strand
Strand 2	C	162	165	parallel
Strand 3	C	169	171	anti-parallel
Strand 4	C	243	246	parallel
Strand 5	C	263	266	parallel
Strand 6	C	255	258	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	118	120	first strand
Strand 2	C	87	89	parallel
Strand 3	C	59	62	parallel
Strand 4	C	280	285	anti-parallel
Strand 5	C	290	298	anti-parallel
Strand 6	H	65	66	parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	118	120	first strand
Strand 2	C	87	89	parallel
Strand 3	C	59	62	parallel
Strand 4	C	280	285	anti-parallel
Strand 5	C	290	298	anti-parallel
Strand 6	H	75	80	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	208	209	first strand
Strand 2	C	225	227	parallel
Strand 3	C	216	218	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	52	55	first strand
Strand 2	D	162	165	parallel
Strand 3	D	169	172	anti-parallel
Strand 4	D	243	246	parallel
Strand 5	D	263	266	parallel
Strand 6	D	255	258	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	118	121	first strand
Strand 2	D	87	90	parallel
Strand 3	D	59	62	parallel
Strand 4	D	280	285	anti-parallel
Strand 5	D	290	298	anti-parallel
Strand 6	G	65	66	parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	118	121	first strand
Strand 2	D	87	90	parallel
Strand 3	D	59	62	parallel
Strand 4	D	280	285	anti-parallel
Strand 5	D	290	298	anti-parallel
Strand 6	G	75	80	parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	208	209	first strand
Strand 2	D	225	227	parallel
Strand 3	D	216	218	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5ZQV

Analysis of interatomic Contacts of Structural Units in PDB entry:
5ZQV