Analysis of interatomic Contacts of Structural Units in PDB entry:
5ZRD

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5ZRD entry

There are 4 chains in PDB entry 5ZRD (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 4	LEU 537
B	ALA 6	LYS 536
C	ALA 6	SER 534
D	PRO 7	SER 534

There are 87 helices in PDB entry 5ZRD. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	12	22	Right-handed alpha
Helix 2	AA2	A	25	41	Right-handed alpha
Helix 3	AA3	A	48	57	Right-handed alpha
Helix 4	AA4	A	63	68	Right-handed alpha
Helix 5	AA5	A	88	108	Right-handed alpha
Helix 6	AA6	A	120	127	Right-handed alpha
Helix 7	AA7	A	129	133	Right-handed 310
Helix 8	AA8	A	187	200	Right-handed alpha
Helix 9	AA9	A	203	221	Right-handed alpha
Helix 10	AB1	A	235	244	Right-handed alpha
Helix 11	AB2	A	248	254	Right-handed alpha
Helix 12	AB3	A	254	265	Right-handed alpha
Helix 13	AB4	A	272	285	Right-handed alpha
Helix 14	AB5	A	301	305	Right-handed 310
Helix 15	AB6	A	308	312	Right-handed 310
Helix 16	AB7	A	313	334	Right-handed alpha
Helix 17	AB8	A	386	389	Right-handed 310
Helix 18	AB9	A	390	396	Right-handed alpha
Helix 19	AC1	A	408	415	Right-handed alpha
Helix 20	AC2	A	493	500	Right-handed 310
Helix 21	AC3	A	510	513	Right-handed 310
Helix 22	AC4	B	12	21	Right-handed alpha
Helix 23	AC5	B	25	41	Right-handed alpha
Helix 24	AC6	B	48	57	Right-handed alpha
Helix 25	AC7	B	63	68	Right-handed alpha
Helix 26	AC8	B	88	108	Right-handed alpha
Helix 27	AC9	B	120	127	Right-handed alpha
Helix 28	AD1	B	129	133	Right-handed 310
Helix 29	AD2	B	187	200	Right-handed alpha
Helix 30	AD3	B	203	221	Right-handed alpha
Helix 31	AD4	B	235	244	Right-handed alpha
Helix 32	AD5	B	248	254	Right-handed alpha
Helix 33	AD6	B	254	265	Right-handed alpha
Helix 34	AD7	B	272	285	Right-handed alpha
Helix 35	AD8	B	301	305	Right-handed 310
Helix 36	AD9	B	308	312	Right-handed 310
Helix 37	AE1	B	313	333	Right-handed alpha
Helix 38	AE2	B	384	388	Right-handed 310
Helix 39	AE3	B	390	396	Right-handed alpha
Helix 40	AE4	B	408	416	Right-handed alpha
Helix 41	AE5	B	493	500	Right-handed 310
Helix 42	AE6	B	521	526	Right-handed alpha
Helix 43	AE7	C	12	22	Right-handed alpha
Helix 44	AE8	C	25	41	Right-handed alpha
Helix 45	AE9	C	48	57	Right-handed alpha
Helix 46	AF1	C	63	68	Right-handed alpha
Helix 47	AF2	C	88	108	Right-handed alpha
Helix 48	AF3	C	120	127	Right-handed alpha
Helix 49	AF4	C	129	133	Right-handed 310
Helix 50	AF5	C	187	200	Right-handed alpha
Helix 51	AF6	C	203	221	Right-handed alpha
Helix 52	AF7	C	235	244	Right-handed alpha
Helix 53	AF8	C	248	254	Right-handed alpha
Helix 54	AF9	C	254	265	Right-handed alpha
Helix 55	AG1	C	272	285	Right-handed alpha
Helix 56	AG2	C	289	293	Right-handed 310
Helix 57	AG3	C	301	305	Right-handed 310
Helix 58	AG4	C	308	312	Right-handed 310
Helix 59	AG5	C	313	333	Right-handed alpha
Helix 60	AG6	C	384	389	Right-handed 310
Helix 61	AG7	C	390	396	Right-handed alpha
Helix 62	AG8	C	408	416	Right-handed alpha
Helix 63	AG9	C	474	478	Right-handed 310
Helix 64	AH1	C	493	500	Right-handed 310
Helix 65	AH2	C	513	526	Right-handed alpha
Helix 66	AH3	D	12	22	Right-handed alpha
Helix 67	AH4	D	25	41	Right-handed alpha
Helix 68	AH5	D	48	55	Right-handed alpha
Helix 69	AH6	D	63	68	Right-handed alpha
Helix 70	AH7	D	88	106	Right-handed alpha
Helix 71	AH8	D	120	127	Right-handed alpha
Helix 72	AH9	D	129	133	Right-handed 310
Helix 73	AI1	D	187	200	Right-handed alpha
Helix 74	AI2	D	203	221	Right-handed alpha
Helix 75	AI3	D	235	244	Right-handed alpha
Helix 76	AI4	D	248	253	Right-handed alpha
Helix 77	AI5	D	254	265	Right-handed alpha
Helix 78	AI6	D	272	285	Right-handed alpha
Helix 79	AI7	D	289	293	Right-handed 310
Helix 80	AI8	D	301	305	Right-handed 310
Helix 81	AI9	D	308	312	Right-handed 310
Helix 82	AJ1	D	313	334	Right-handed alpha
Helix 83	AJ2	D	386	389	Right-handed 310
Helix 84	AJ3	D	408	415	Right-handed alpha
Helix 85	AJ4	D	493	500	Right-handed 310
Helix 86	AJ5	D	513	515	Right-handed 310
Helix 87	AJ6	D	516	527	Right-handed alpha

There are 21 sheets in PDB entry 5ZRD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	8	10	first strand
Strand 2	A	397	399	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	136	139	first strand
Strand 2	A	142	145	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	164	166	first strand
Strand 2	D	164	166	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	294	296	first strand
Strand 2	A	501	508	parallel
Strand 3	A	440	449	anti-parallel
Strand 4	A	455	465	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	371	376	first strand
Strand 2	A	382	384	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	484	488	first strand
Strand 2	A	425	429	anti-parallel
Strand 3	A	530	533	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	8	10	first strand
Strand 2	B	397	399	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	136	139	first strand
Strand 2	B	142	145	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	164	166	first strand
Strand 2	C	164	166	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	294	296	first strand
Strand 2	B	501	508	parallel
Strand 3	B	440	449	anti-parallel
Strand 4	B	455	465	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	483	488	first strand
Strand 2	B	425	430	anti-parallel
Strand 3	B	530	533	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	8	10	first strand
Strand 2	C	397	399	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	136	139	first strand
Strand 2	C	142	145	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	485	488	first strand
Strand 2	C	425	429	anti-parallel
Strand 3	C	530	533	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	434	435	first strand
Strand 2	C	480	481	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	455	465	first strand
Strand 2	C	440	449	anti-parallel
Strand 3	C	501	508	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	8	10	first strand
Strand 2	D	397	399	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	136	139	first strand
Strand 2	D	142	145	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	371	376	first strand
Strand 2	D	382	384	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	480	488	first strand
Strand 2	D	425	435	anti-parallel
Strand 3	D	530	533	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	455	465	first strand
Strand 2	D	440	449	anti-parallel
Strand 3	D	501	507	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5ZRD

Analysis of interatomic Contacts of Structural Units in PDB entry:
5ZRD