Analysis of interatomic Contacts of Structural Units in PDB entry:
5ZRE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5ZRE entry

There are 3 chains in PDB entry 5ZRE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 6SER 534
B
 ALA 6SER 534
C
 ALA 6SER 534
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 61 helices in PDB entry 5ZRE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 21Right-handed alpha
Helix 2
AA2
A
25 41Right-handed alpha
Helix 3
AA3
A
48 55Right-handed alpha
Helix 4
AA4
A
88 106Right-handed alpha
Helix 5
AA5
A
120 127Right-handed alpha
Helix 6
AA6
A
129 133Right-handed 310
Helix 7
AA7
A
187 199Right-handed alpha
Helix 8
AA8
A
203 221Right-handed alpha
Helix 9
AA9
A
235 244Right-handed alpha
Helix 10
AB1
A
248 254Right-handed alpha
Helix 11
AB2
A
254 263Right-handed alpha
Helix 12
AB3
A
272 284Right-handed alpha
Helix 13
AB4
A
301 305Right-handed 310
Helix 14
AB5
A
308 312Right-handed 310
Helix 15
AB6
A
313 334Right-handed alpha
Helix 16
AB7
A
386 389Right-handed 310
Helix 17
AB8
A
390 396Right-handed alpha
Helix 18
AB9
A
409 414Right-handed alpha
Helix 19
AC1
A
493 500Right-handed 310
Helix 20
AC2
A
513 526Right-handed alpha
Helix 21
AC3
B
12 22Right-handed alpha
Helix 22
AC4
B
25 41Right-handed alpha
Helix 23
AC5
B
48 55Right-handed alpha
Helix 24
AC6
B
88 106Right-handed alpha
Helix 25
AC7
B
120 127Right-handed alpha
Helix 26
AC8
B
129 133Right-handed 310
Helix 27
AC9
B
187 200Right-handed alpha
Helix 28
AD1
B
203 221Right-handed alpha
Helix 29
AD2
B
235 244Right-handed alpha
Helix 30
AD3
B
248 254Right-handed alpha
Helix 31
AD4
B
254 265Right-handed alpha
Helix 32
AD5
B
272 284Right-handed alpha
Helix 33
AD6
B
301 305Right-handed 310
Helix 34
AD7
B
308 312Right-handed 310
Helix 35
AD8
B
313 334Right-handed alpha
Helix 36
AD9
B
386 389Right-handed 310
Helix 37
AE1
B
390 396Right-handed alpha
Helix 38
AE2
B
408 415Right-handed alpha
Helix 39
AE3
B
493 498Right-handed 310
Helix 40
AE4
B
513 515Right-handed 310
Helix 41
AE5
B
516 526Right-handed alpha
Helix 42
AE6
C
12 21Right-handed alpha
Helix 43
AE7
C
25 41Right-handed alpha
Helix 44
AE8
C
48 54Right-handed alpha
Helix 45
AE9
C
88 108Right-handed alpha
Helix 46
AF1
C
120 127Right-handed alpha
Helix 47
AF2
C
129 133Right-handed 310
Helix 48
AF3
C
187 199Right-handed alpha
Helix 49
AF4
C
203 221Right-handed alpha
Helix 50
AF5
C
235 244Right-handed alpha
Helix 51
AF6
C
248 254Right-handed alpha
Helix 52
AF7
C
254 265Right-handed alpha
Helix 53
AF8
C
272 285Right-handed alpha
Helix 54
AF9
C
301 305Right-handed 310
Helix 55
AG1
C
308 312Right-handed 310
Helix 56
AG2
C
313 334Right-handed alpha
Helix 57
AG3
C
386 389Right-handed 310
Helix 58
AG4
C
408 415Right-handed alpha
Helix 59
AG5
C
432 436Right-handed 310
Helix 60
AG6
C
493 497Right-handed 310
Helix 61
AG7
C
513 526Right-handed alpha
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There are 15 sheets in PDB entry 5ZRE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 10first strand
Strand 2
A
397 399parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
136 139first strand
Strand 2
A
142 145anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
371 376first strand
Strand 2
A
382 384anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
482 488first strand
Strand 2
A
425 432anti-parallel
Strand 3
A
530 533anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
455 465first strand
Strand 2
A
440 449anti-parallel
Strand 3
A
501 507anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
8 10first strand
Strand 2
B
397 399parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
136 139first strand
Strand 2
B
142 145anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
371 376first strand
Strand 2
B
382 384anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
482 488first strand
Strand 2
B
425 432anti-parallel
Strand 3
B
530 533anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
455 465first strand
Strand 2
B
440 449anti-parallel
Strand 3
B
500 507anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
8 10first strand
Strand 2
C
397 399parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
136 139first strand
Strand 2
C
142 145anti-parallel
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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
371 376first strand
Strand 2
C
382 384anti-parallel
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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
485 488first strand
Strand 2
C
425 429anti-parallel
Strand 3
C
530 533anti-parallel
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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
455 465first strand
Strand 2
C
440 449anti-parallel
Strand 3
C
501 508anti-parallel
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