Analysis of interatomic Contacts of Structural Units in PDB entry:
5ZRN

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5ZRN entry

There are 2 chains in PDB entry 5ZRN (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	LEU 398
B	MET 1	LEU 398

There are 32 helices in PDB entry 5ZRN. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	3	15	Right-handed alpha
Helix 2	AA2	A	24	27	Right-handed 310
Helix 3	AA3	A	32	49	Right-handed alpha
Helix 4	AA4	A	64	78	Right-handed alpha
Helix 5	AA5	A	89	101	Right-handed alpha
Helix 6	AA6	A	111	121	Right-handed alpha
Helix 7	AA7	A	133	143	Right-handed alpha
Helix 8	AA8	A	178	192	Right-handed alpha
Helix 9	AA9	A	208	222	Right-handed alpha
Helix 10	AB1	A	235	243	Right-handed alpha
Helix 11	AB2	A	251	259	Right-handed alpha
Helix 12	AB3	A	261	265	Right-handed 310
Helix 13	AB4	A	283	293	Right-handed alpha
Helix 14	AB5	A	304	307	Right-handed 310
Helix 15	AB6	A	314	318	Right-handed 310
Helix 16	AB7	A	365	372	Right-handed alpha
Helix 17	AB8	B	3	15	Right-handed alpha
Helix 18	AB9	B	24	27	Right-handed 310
Helix 19	AC1	B	32	49	Right-handed alpha
Helix 20	AC2	B	64	78	Right-handed alpha
Helix 21	AC3	B	89	101	Right-handed alpha
Helix 22	AC4	B	111	121	Right-handed alpha
Helix 23	AC5	B	133	143	Right-handed alpha
Helix 24	AC6	B	178	192	Right-handed alpha
Helix 25	AC7	B	208	222	Right-handed alpha
Helix 26	AC8	B	235	243	Right-handed alpha
Helix 27	AC9	B	251	259	Right-handed alpha
Helix 28	AD1	B	260	265	Right-handed 310
Helix 29	AD2	B	283	293	Right-handed alpha
Helix 30	AD3	B	304	307	Right-handed 310
Helix 31	AD4	B	314	318	Right-handed 310
Helix 32	AD5	B	365	372	Right-handed alpha

There are 10 sheets in PDB entry 5ZRN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	28	31	first strand
Strand 2	A	19	23	anti-parallel
Strand 3	A	224	227	parallel
Strand 4	A	199	202	parallel
Strand 5	A	247	249	parallel
Strand 6	A	274	278	parallel
Strand 7	A	296	302	parallel
Strand 8	A	310	313	anti-parallel
Strand 9	A	327	328	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	80	83	first strand
Strand 2	A	56	60	parallel
Strand 3	A	104	107	parallel
Strand 4	A	130	132	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	158	163	first strand
Strand 2	A	173	177	anti-parallel
Strand 3	A	361	362	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	343	344	first strand
Strand 2	A	332	337	anti-parallel
Strand 3	A	347	355	anti-parallel
Strand 4	A	377	386	anti-parallel
Strand 5	A	373	374	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	343	344	first strand
Strand 2	A	332	337	anti-parallel
Strand 3	A	347	355	anti-parallel
Strand 4	A	377	386	anti-parallel
Strand 5	A	392	397	anti-parallel

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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	28	31	first strand
Strand 2	B	19	23	anti-parallel
Strand 3	B	224	227	parallel
Strand 4	B	199	202	parallel
Strand 5	B	247	250	parallel
Strand 6	B	274	278	parallel
Strand 7	B	296	302	parallel
Strand 8	B	310	313	anti-parallel
Strand 9	B	327	328	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	80	83	first strand
Strand 2	B	56	60	parallel
Strand 3	B	104	107	parallel
Strand 4	B	130	132	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	158	164	first strand
Strand 2	B	172	177	anti-parallel
Strand 3	B	361	362	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	343	344	first strand
Strand 2	B	332	337	anti-parallel
Strand 3	B	347	355	anti-parallel
Strand 4	B	377	386	anti-parallel
Strand 5	B	373	374	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	343	344	first strand
Strand 2	B	332	337	anti-parallel
Strand 3	B	347	355	anti-parallel
Strand 4	B	377	386	anti-parallel
Strand 5	B	392	397	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5ZRN

Analysis of interatomic Contacts of Structural Units in PDB entry:
5ZRN