Analysis of interatomic Contacts of Structural Units in PDB entry:
5ZSP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5ZSP entry

There are 4 chains in PDB entry 5ZSP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA -1HIS 203
A
 PHE 205ALA 386
B
 ALA -1HIS 203
B
 PHE 205SER 384
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 5ZSP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
14 22Right-handed alpha
Helix 2
AA2
A
23 25Right-handed 310
Helix 3
AA3
A
36 41Right-handed alpha
Helix 4
AA4
A
42 58Right-handed alpha
Helix 5
AA5
A
70 87Right-handed alpha
Helix 6
AA6
A
102 115Right-handed alpha
Helix 7
AA7
A
131 139Right-handed alpha
Helix 8
AA8
A
160 172Right-handed alpha
Helix 9
AA9
A
203 205Right-handed 310
Helix 10
AB1
A
218 220Right-handed 310
Helix 11
AB2
A
241 279Right-handed alpha
Helix 12
AB3
A
288 292Right-handed 310
Helix 13
AB4
A
305 316Right-handed alpha
Helix 14
AB5
A
360 380Right-handed alpha
Helix 15
AB6
B
14 22Right-handed alpha
Helix 16
AB7
B
23 25Right-handed 310
Helix 17
AB8
B
36 41Right-handed alpha
Helix 18
AB9
B
42 58Right-handed alpha
Helix 19
AC1
B
70 87Right-handed alpha
Helix 20
AC2
B
102 115Right-handed alpha
Helix 21
AC3
B
131 139Right-handed alpha
Helix 22
AC4
B
160 172Right-handed alpha
Helix 23
AC5
B
203 205Right-handed 310
Helix 24
AC6
B
218 220Right-handed 310
Helix 25
AC7
B
241 262Right-handed alpha
Helix 26
AC8
B
262 279Right-handed alpha
Helix 27
AC9
B
288 292Right-handed 310
Helix 28
AD1
B
305 316Right-handed alpha
Helix 29
AD2
B
360 380Right-handed alpha
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There are 6 sheets in PDB entry 5ZSP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 4first strand
Strand 2
A
318 319parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
64 68first strand
Strand 2
A
212 216anti-parallel
Strand 3
A
197 201anti-parallel
Strand 4
A
174 178parallel
Strand 5
A
143 147parallel
Strand 6
A
94 98parallel
Strand 7
A
118 122parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
283 285first strand
Strand 2
A
296 301anti-parallel
Strand 3
A
348 354anti-parallel
Strand 4
A
321 329anti-parallel
Strand 5
A
335 339anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 4first strand
Strand 2
B
318 319parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
64 68first strand
Strand 2
B
212 216anti-parallel
Strand 3
B
197 201anti-parallel
Strand 4
B
174 178parallel
Strand 5
B
143 147parallel
Strand 6
B
94 98parallel
Strand 7
B
118 122parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
283 285first strand
Strand 2
B
296 301anti-parallel
Strand 3
B
348 354anti-parallel
Strand 4
B
321 328anti-parallel
Strand 5
B
336 339anti-parallel
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