Analysis of interatomic Contacts of Structural Units in PDB entry:
5ZSS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5ZSS entry

There are 3 chains in PDB entry 5ZSS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA -1ALA 386
B
 HIS 0HIS 203
B
 PHE 205SER 384
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 5ZSS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
14 22Right-handed alpha
Helix 2
AA2
A
23 25Right-handed 310
Helix 3
AA3
A
36 41Right-handed alpha
Helix 4
AA4
A
42 58Right-handed alpha
Helix 5
AA5
A
70 87Right-handed alpha
Helix 6
AA6
A
102 114Right-handed alpha
Helix 7
AA7
A
131 139Right-handed alpha
Helix 8
AA8
A
160 172Right-handed alpha
Helix 9
AA9
A
203 205Right-handed 310
Helix 10
AB1
A
241 279Right-handed alpha
Helix 11
AB2
A
288 292Right-handed 310
Helix 12
AB3
A
305 316Right-handed alpha
Helix 13
AB4
A
360 381Right-handed alpha
Helix 14
AB5
B
14 22Right-handed alpha
Helix 15
AB6
B
23 25Right-handed 310
Helix 16
AB7
B
36 41Right-handed alpha
Helix 17
AB8
B
42 58Right-handed alpha
Helix 18
AB9
B
70 87Right-handed alpha
Helix 19
AC1
B
102 115Right-handed alpha
Helix 20
AC2
B
131 139Right-handed alpha
Helix 21
AC3
B
160 171Right-handed alpha
Helix 22
AC4
B
203 205Right-handed 310
Helix 23
AC5
B
218 220Right-handed 310
Helix 24
AC6
B
241 261Right-handed alpha
Helix 25
AC7
B
262 279Right-handed alpha
Helix 26
AC8
B
288 292Right-handed 310
Helix 27
AC9
B
305 316Right-handed alpha
Helix 28
AD1
B
360 381Right-handed alpha
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There are 6 sheets in PDB entry 5ZSS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 4first strand
Strand 2
A
318 319parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
64 68first strand
Strand 2
A
212 216anti-parallel
Strand 3
A
197 201anti-parallel
Strand 4
A
174 178parallel
Strand 5
A
143 147parallel
Strand 6
A
94 98parallel
Strand 7
A
118 122parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
283 285first strand
Strand 2
A
296 301anti-parallel
Strand 3
A
348 354anti-parallel
Strand 4
A
321 329anti-parallel
Strand 5
A
335 339anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 4first strand
Strand 2
B
318 319parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
64 68first strand
Strand 2
B
212 216anti-parallel
Strand 3
B
197 201anti-parallel
Strand 4
B
174 178parallel
Strand 5
B
143 147parallel
Strand 6
B
94 98parallel
Strand 7
B
118 122parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
283 285first strand
Strand 2
B
296 301anti-parallel
Strand 3
B
347 354anti-parallel
Strand 4
B
321 328anti-parallel
Strand 5
B
336 339anti-parallel
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