Analysis of interatomic Contacts of Structural Units in PDB entry:
5ZT1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5ZT1 entry

There are 2 chains in PDB entry 5ZT1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 SER -3ARG 430
A
 SER -3ILE 429
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 28 helices in PDB entry 5ZT1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
88 92Right-handed 310
Helix 2
AA2
B
140 147Right-handed alpha
Helix 3
AA3
B
162 176Right-handed alpha
Helix 4
AA4
B
189 202Right-handed alpha
Helix 5
AA5
B
203 207Right-handed 310
Helix 6
AA6
B
219 240Right-handed alpha
Helix 7
AA7
B
250 265Right-handed alpha
Helix 8
AA8
B
277 287Right-handed alpha
Helix 9
AA9
B
314 323Right-handed alpha
Helix 10
AB1
B
330 335Right-handed alpha
Helix 11
AB2
B
357 375Right-handed alpha
Helix 12
AB3
B
394 409Right-handed alpha
Helix 13
AB4
B
417 427Right-handed alpha
Helix 14
AB5
A
88 92Right-handed 310
Helix 15
AB6
A
140 147Right-handed alpha
Helix 16
AB7
A
164 176Right-handed alpha
Helix 17
AB8
A
189 202Right-handed alpha
Helix 18
AB9
A
205 207Right-handed 310
Helix 19
AC1
A
219 240Right-handed alpha
Helix 20
AC2
A
250 266Right-handed alpha
Helix 21
AC3
A
275 280Right-handed alpha
Helix 22
AC4
A
281 287Right-handed alpha
Helix 23
AC5
A
313 323Right-handed alpha
Helix 24
AC6
A
331 336Right-handed alpha
Helix 25
AC7
A
351 356Right-handed alpha
Helix 26
AC8
A
359 378Right-handed alpha
Helix 27
AC9
A
397 409Right-handed alpha
Helix 28
AD1
A
417 428Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 5ZT1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
84 87first strand
Strand 2
B
115 118anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
102 105first strand
Strand 2
B
94 96anti-parallel
Strand 3
B
209 214parallel
Strand 4
B
180 186parallel
Strand 5
B
243 249parallel
Strand 6
B
297 305parallel
Strand 7
B
154 159parallel
Strand 8
B
325 328parallel
Strand 9
B
348 349anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
135 136first strand
Strand 2
B
149 150anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
269 271first strand
Strand 2
B
274 275anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
84 87first strand
Strand 2
A
115 118anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
102 105first strand
Strand 2
A
94 96anti-parallel
Strand 3
A
209 214parallel
Strand 4
A
180 186parallel
Strand 5
A
243 249parallel
Strand 6
A
297 305parallel
Strand 7
A
290 291anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
102 105first strand
Strand 2
A
94 96anti-parallel
Strand 3
A
209 214parallel
Strand 4
A
180 186parallel
Strand 5
A
243 249parallel
Strand 6
A
297 305parallel
Strand 7
A
154 159parallel
Strand 8
A
325 328parallel
Strand 9
A
348 349anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
135 136first strand
Strand 2
A
149 150anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il