Analysis of interatomic Contacts of Structural Units in PDB entry:
5ZT9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5ZT9 entry

There are 2 chains in PDB entry 5ZT9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 2ALA 257
B
 MET 1GLY 254
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 5ZT9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
14 29Right-handed alpha
Helix 2
AA2
A
30 32Right-handed 310
Helix 3
AA3
A
48 59Right-handed alpha
Helix 4
AA4
A
74 79Right-handed alpha
Helix 5
AA5
A
79 90Right-handed alpha
Helix 6
AA6
A
106 119Right-handed alpha
Helix 7
AA7
A
138 156Right-handed alpha
Helix 8
AA8
A
172 180Right-handed alpha
Helix 9
AA9
A
198 215Right-handed alpha
Helix 10
AB1
A
227 244Right-handed alpha
Helix 11
AB2
B
14 29Right-handed alpha
Helix 12
AB3
B
30 32Right-handed 310
Helix 13
AB4
B
48 59Right-handed alpha
Helix 14
AB5
B
74 79Right-handed alpha
Helix 15
AB6
B
79 90Right-handed alpha
Helix 16
AB7
B
106 119Right-handed alpha
Helix 17
AB8
B
138 156Right-handed alpha
Helix 18
AB9
B
172 180Right-handed alpha
Helix 19
AC1
B
198 215Right-handed alpha
Helix 20
AC2
B
227 244Right-handed alpha
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There are 4 sheets in PDB entry 5ZT9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
36 41first strand
Strand 2
A
3 9parallel
Strand 3
A
63 68parallel
Strand 4
A
96 99parallel
Strand 5
A
250 251anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
160 165first strand
Strand 2
A
128 133parallel
Strand 3
A
188 193parallel
Strand 4
A
218 220parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
36 41first strand
Strand 2
B
3 9parallel
Strand 3
B
63 69parallel
Strand 4
B
96 99parallel
Strand 5
B
250 251anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
160 165first strand
Strand 2
B
128 133parallel
Strand 3
B
188 192parallel
Strand 4
B
218 220parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il