Analysis of interatomic Contacts of Structural Units in PDB entry:
5ZU3

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5ZU3 entry

There are 3 chains in PDB entry 5ZU3 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 2	TYR 578
B	ALA 2	TYR 578
C	ALA 2	TYR 578

There are 76 helices in PDB entry 5ZU3. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	16	27	Right-handed alpha
Helix 2	AA2	A	43	46	Right-handed 310
Helix 3	AA3	A	47	52	Right-handed alpha
Helix 4	AA4	A	53	60	Right-handed 310
Helix 5	AA5	A	92	97	Right-handed 310
Helix 6	AA6	A	106	112	Right-handed alpha
Helix 7	AA7	A	113	118	Right-handed alpha
Helix 8	AA8	A	119	121	Right-handed 310
Helix 9	AA9	A	122	133	Right-handed alpha
Helix 10	AB1	A	144	151	Right-handed 310
Helix 11	AB2	A	164	166	Right-handed 310
Helix 12	AB3	A	167	181	Right-handed alpha
Helix 13	AB4	A	211	216	Right-handed 310
Helix 14	AB5	A	267	279	Right-handed alpha
Helix 15	AB6	A	283	290	Right-handed alpha
Helix 16	AB7	A	323	328	Right-handed alpha
Helix 17	AB8	A	331	345	Right-handed alpha
Helix 18	AB9	A	347	351	Right-handed 310
Helix 19	AC1	A	362	367	Right-handed alpha
Helix 20	AC2	A	369	379	Right-handed alpha
Helix 21	AC3	A	402	406	Right-handed 310
Helix 22	AC4	A	454	475	Right-handed alpha
Helix 23	AC5	A	477	480	Right-handed 310
Helix 24	AC6	A	494	506	Right-handed alpha
Helix 25	AC7	A	543	547	Right-handed 310
Helix 26	AC8	A	555	574	Right-handed alpha
Helix 27	AC9	B	16	27	Right-handed alpha
Helix 28	AD1	B	43	46	Right-handed 310
Helix 29	AD2	B	47	52	Right-handed alpha
Helix 30	AD3	B	53	60	Right-handed 310
Helix 31	AD4	B	92	97	Right-handed 310
Helix 32	AD5	B	106	112	Right-handed alpha
Helix 33	AD6	B	113	118	Right-handed alpha
Helix 34	AD7	B	119	121	Right-handed 310
Helix 35	AD8	B	122	132	Right-handed alpha
Helix 36	AD9	B	144	151	Right-handed 310
Helix 37	AE1	B	167	180	Right-handed alpha
Helix 38	AE2	B	211	216	Right-handed 310
Helix 39	AE3	B	267	279	Right-handed alpha
Helix 40	AE4	B	283	290	Right-handed alpha
Helix 41	AE5	B	323	328	Right-handed alpha
Helix 42	AE6	B	331	345	Right-handed alpha
Helix 43	AE7	B	347	351	Right-handed 310
Helix 44	AE8	B	362	367	Right-handed alpha
Helix 45	AE9	B	369	379	Right-handed alpha
Helix 46	AF1	B	402	406	Right-handed 310
Helix 47	AF2	B	454	475	Right-handed alpha
Helix 48	AF3	B	477	480	Right-handed 310
Helix 49	AF4	B	494	506	Right-handed alpha
Helix 50	AF5	B	543	547	Right-handed 310
Helix 51	AF6	B	555	574	Right-handed alpha
Helix 52	AF7	C	16	27	Right-handed alpha
Helix 53	AF8	C	43	46	Right-handed 310
Helix 54	AF9	C	47	52	Right-handed alpha
Helix 55	AG1	C	53	60	Right-handed 310
Helix 56	AG2	C	92	97	Right-handed 310
Helix 57	AG3	C	106	113	Right-handed alpha
Helix 58	AG4	C	113	118	Right-handed alpha
Helix 59	AG5	C	119	121	Right-handed 310
Helix 60	AG6	C	122	132	Right-handed alpha
Helix 61	AG7	C	144	151	Right-handed 310
Helix 62	AG8	C	167	181	Right-handed alpha
Helix 63	AG9	C	211	217	Right-handed 310
Helix 64	AH1	C	267	279	Right-handed alpha
Helix 65	AH2	C	283	289	Right-handed alpha
Helix 66	AH3	C	323	328	Right-handed alpha
Helix 67	AH4	C	331	345	Right-handed alpha
Helix 68	AH5	C	347	351	Right-handed 310
Helix 69	AH6	C	362	367	Right-handed alpha
Helix 70	AH7	C	369	379	Right-handed alpha
Helix 71	AH8	C	402	406	Right-handed 310
Helix 72	AH9	C	454	475	Right-handed alpha
Helix 73	AI1	C	477	480	Right-handed 310
Helix 74	AI2	C	494	506	Right-handed alpha
Helix 75	AI3	C	543	547	Right-handed 310
Helix 76	AI4	C	555	574	Right-handed alpha

There are 27 sheets in PDB entry 5ZU3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	222	225	first strand
Strand 2	A	34	37	parallel
Strand 3	A	7	13	parallel
Strand 4	A	254	265	parallel
Strand 5	A	241	249	anti-parallel
Strand 6	A	228	236	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	222	225	first strand
Strand 2	A	34	37	parallel
Strand 3	A	7	13	parallel
Strand 4	A	254	265	parallel
Strand 5	A	539	541	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	68	74	first strand
Strand 2	A	79	85	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	101	102	first strand
Strand 2	A	201	202	anti-parallel
Strand 3	A	156	160	anti-parallel
Strand 4	A	134	137	parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	196	199	first strand
Strand 2	A	354	359	anti-parallel
Strand 3	A	393	398	anti-parallel
Strand 4	A	416	424	anti-parallel
Strand 5	A	309	317	anti-parallel
Strand 6	A	482	486	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	196	199	first strand
Strand 2	A	354	359	anti-parallel
Strand 3	A	393	398	anti-parallel
Strand 4	A	416	424	anti-parallel
Strand 5	A	309	317	anti-parallel
Strand 6	A	507	508	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	204	205	first strand
Strand 2	A	208	209	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	281	282	first strand
Strand 2	A	296	297	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	303	305	first strand
Strand 2	A	432	435	anti-parallel
Strand 3	A	446	448	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	222	225	first strand
Strand 2	B	34	37	parallel
Strand 3	B	7	13	parallel
Strand 4	B	254	265	parallel
Strand 5	B	241	248	anti-parallel
Strand 6	B	229	236	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	222	225	first strand
Strand 2	B	34	37	parallel
Strand 3	B	7	13	parallel
Strand 4	B	254	265	parallel
Strand 5	B	539	541	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	68	75	first strand
Strand 2	B	78	85	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	134	137	first strand
Strand 2	B	156	160	parallel
Strand 3	B	201	202	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	196	199	first strand
Strand 2	B	354	359	anti-parallel
Strand 3	B	393	398	anti-parallel
Strand 4	B	416	424	anti-parallel
Strand 5	B	309	317	anti-parallel
Strand 6	B	482	486	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	196	199	first strand
Strand 2	B	354	359	anti-parallel
Strand 3	B	393	398	anti-parallel
Strand 4	B	416	424	anti-parallel
Strand 5	B	309	317	anti-parallel
Strand 6	B	507	508	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	204	205	first strand
Strand 2	B	208	209	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	281	282	first strand
Strand 2	B	296	297	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	433	435	first strand
Strand 2	B	446	448	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	222	225	first strand
Strand 2	C	34	37	parallel
Strand 3	C	7	13	parallel
Strand 4	C	254	265	parallel
Strand 5	C	241	249	anti-parallel
Strand 6	C	228	236	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	222	225	first strand
Strand 2	C	34	37	parallel
Strand 3	C	7	13	parallel
Strand 4	C	254	265	parallel
Strand 5	C	539	541	parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	68	74	first strand
Strand 2	C	79	85	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	101	102	first strand
Strand 2	C	201	202	anti-parallel
Strand 3	C	156	160	anti-parallel
Strand 4	C	134	137	parallel

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There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	196	199	first strand
Strand 2	C	354	359	anti-parallel
Strand 3	C	393	398	anti-parallel
Strand 4	C	416	424	anti-parallel
Strand 5	C	309	317	anti-parallel
Strand 6	C	482	486	anti-parallel

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There are 6 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	196	199	first strand
Strand 2	C	354	359	anti-parallel
Strand 3	C	393	398	anti-parallel
Strand 4	C	416	424	anti-parallel
Strand 5	C	309	317	anti-parallel
Strand 6	C	507	508	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	204	205	first strand
Strand 2	C	208	209	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	281	282	first strand
Strand 2	C	296	297	parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	303	305	first strand
Strand 2	C	432	435	anti-parallel
Strand 3	C	446	448	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5ZU3

Analysis of interatomic Contacts of Structural Units in PDB entry:
5ZU3