Analysis of interatomic Contacts of Structural Units in PDB entry:
5ZUM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5ZUM entry

There are 2 chains in PDB entry 5ZUM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 28LYS 560
B
 ARG 28ALA 564
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 56 helices in PDB entry 5ZUM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
31 40Right-handed alpha
Helix 2
AA2
A
55 71Right-handed alpha
Helix 3
AA3
A
71 81Right-handed alpha
Helix 4
AA4
A
83 92Right-handed alpha
Helix 5
AA5
A
96 110Right-handed alpha
Helix 6
AA6
A
141 151Right-handed alpha
Helix 7
AA7
A
153 162Right-handed alpha
Helix 8
AA8
A
180 184Right-handed alpha
Helix 9
AA9
A
184 202Right-handed alpha
Helix 10
AB1
A
204 221Right-handed alpha
Helix 11
AB2
A
223 232Right-handed alpha
Helix 12
AB3
A
266 274Right-handed alpha
Helix 13
AB4
A
275 278Right-handed 310
Helix 14
AB5
A
279 286Right-handed alpha
Helix 15
AB6
A
290 294Right-handed 310
Helix 16
AB7
A
330 338Right-handed alpha
Helix 17
AB8
A
345 355Right-handed alpha
Helix 18
AB9
A
355 364Right-handed alpha
Helix 19
AC1
A
365 372Right-handed 310
Helix 20
AC2
A
373 389Right-handed alpha
Helix 21
AC3
A
404 409Right-handed alpha
Helix 22
AC4
A
411 434Right-handed alpha
Helix 23
AC5
A
440 458Right-handed alpha
Helix 24
AC6
A
463 479Right-handed alpha
Helix 25
AC7
A
493 515Right-handed alpha
Helix 26
AC8
A
516 528Right-handed alpha
Helix 27
AC9
A
531 540Right-handed alpha
Helix 28
AD1
A
552 559Right-handed alpha
Helix 29
AD2
B
31 41Right-handed alpha
Helix 30
AD3
B
55 71Right-handed alpha
Helix 31
AD4
B
71 81Right-handed alpha
Helix 32
AD5
B
83 94Right-handed alpha
Helix 33
AD6
B
96 110Right-handed alpha
Helix 34
AD7
B
141 151Right-handed alpha
Helix 35
AD8
B
153 161Right-handed alpha
Helix 36
AD9
B
180 184Right-handed alpha
Helix 37
AE1
B
184 202Right-handed alpha
Helix 38
AE2
B
204 221Right-handed alpha
Helix 39
AE3
B
223 232Right-handed alpha
Helix 40
AE4
B
266 274Right-handed alpha
Helix 41
AE5
B
275 278Right-handed 310
Helix 42
AE6
B
279 286Right-handed alpha
Helix 43
AE7
B
290 294Right-handed 310
Helix 44
AE8
B
330 338Right-handed alpha
Helix 45
AE9
B
345 355Right-handed alpha
Helix 46
AF1
B
355 364Right-handed alpha
Helix 47
AF2
B
365 372Right-handed 310
Helix 48
AF3
B
373 389Right-handed alpha
Helix 49
AF4
B
404 409Right-handed alpha
Helix 50
AF5
B
411 434Right-handed alpha
Helix 51
AF6
B
440 458Right-handed alpha
Helix 52
AF7
B
463 479Right-handed alpha
Helix 53
AF8
B
493 515Right-handed alpha
Helix 54
AF9
B
516 528Right-handed alpha
Helix 55
AG1
B
531 540Right-handed alpha
Helix 56
AG2
B
552 563Right-handed alpha
Back to top of page

There are 10 sheets in PDB entry 5ZUM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 46first strand
Strand 2
A
547 551parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
165 169first strand
Strand 2
A
175 179anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
237 243first strand
Strand 2
A
258 265anti-parallel
Strand 3
A
304 314anti-parallel
Strand 4
A
340 344parallel
Strand 5
A
324 327anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
394 397first strand
Strand 2
A
400 403anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
482 484first strand
Strand 2
A
490 492anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
42 46first strand
Strand 2
B
547 551parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
165 169first strand
Strand 2
B
175 179anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
237 245first strand
Strand 2
B
257 265anti-parallel
Strand 3
B
304 314anti-parallel
Strand 4
B
340 344parallel
Strand 5
B
324 327anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
394 397first strand
Strand 2
B
400 403anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
482 484first strand
Strand 2
B
490 492anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il