Analysis of interatomic Contacts of Structural Units in PDB entry:
5ZUP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5ZUP entry

There are 6 chains in PDB entry 5ZUP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS -2VAL 199
B
 HIS -2GLN 202
C
 SER -3GLN 202
D
 SER -3VAL 199
E
 G 1 C 17
F
 A 18 G 34
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 5ZUP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
-2 146Right-handed alpha
Helix 2
AA2
A
157 165Right-handed alpha
Helix 3
AA3
A
168 182Right-handed alpha
Helix 4
AA4
B
-1 149Right-handed alpha
Helix 5
AA5
B
157 165Right-handed alpha
Helix 6
AA6
B
168 182Right-handed alpha
Helix 7
AA7
C
-2 151Right-handed alpha
Helix 8
AA8
C
158 165Right-handed alpha
Helix 9
AA9
C
168 182Right-handed alpha
Helix 10
AB1
D
-2 150Right-handed alpha
Helix 11
AB2
D
157 164Right-handed alpha
Helix 12
AB3
D
168 182Right-handed alpha
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There are 4 sheets in PDB entry 5ZUP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
185 188first strand
Strand 2
A
194 197anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
185 188first strand
Strand 2
B
194 197anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
156 157first strand
Strand 2
C
194 197anti-parallel
Strand 3
C
185 188anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
185 188first strand
Strand 2
D
194 197anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il