Analysis of interatomic Contacts of Structural Units in PDB entry:
5ZVB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5ZVB entry

There are 3 chains in PDB entry 5ZVB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR -29GLU 373
B
 TYR -29GLU 373
C
 A 1 T 9
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 5ZVB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
-22 -13Right-handed alpha
Helix 2
AA2
A
249 262Right-handed alpha
Helix 3
AA3
A
280 294Right-handed alpha
Helix 4
AA4
A
311 324Right-handed alpha
Helix 5
AA5
A
332 343Right-handed alpha
Helix 6
AA6
A
356 373Right-handed alpha
Helix 7
AA7
B
-22 -13Right-handed alpha
Helix 8
AA8
B
249 262Right-handed alpha
Helix 9
AA9
B
280 294Right-handed alpha
Helix 10
AB1
B
311 324Right-handed alpha
Helix 11
AB2
B
332 343Right-handed alpha
Helix 12
AB3
B
356 373Right-handed alpha
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There are 2 sheets in PDB entry 5ZVB. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
-28 -27first strand
Strand 2
A
232 239parallel
Strand 3
A
-1 226anti-parallel
Strand 4
A
267 277anti-parallel
Strand 5
A
297 305parallel
Strand 6
A
327 330parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
-28 -27first strand
Strand 2
B
232 239parallel
Strand 3
B
-1 225anti-parallel
Strand 4
B
268 277anti-parallel
Strand 5
B
297 305parallel
Strand 6
B
327 330parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il