Analysis of interatomic Contacts of Structural Units in PDB entry:
5ZVE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5ZVE entry

There are 2 chains in PDB entry 5ZVE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 TYR 5ASP 388
A
 TYR 5ASP 388
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 5ZVE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
5 9Right-handed 310
Helix 2
AA2
B
10 22Right-handed alpha
Helix 3
AA3
B
22 34Right-handed alpha
Helix 4
AA4
B
50 61Right-handed alpha
Helix 5
AA5
B
98 106Right-handed alpha
Helix 6
AA6
B
147 152Right-handed alpha
Helix 7
AA7
B
175 180Right-handed alpha
Helix 8
AA8
B
187 198Right-handed alpha
Helix 9
AA9
B
213 223Right-handed alpha
Helix 10
AB1
B
235 250Right-handed alpha
Helix 11
AB2
B
260 267Right-handed 310
Helix 12
AB3
B
294 315Right-handed alpha
Helix 13
AB4
B
334 344Right-handed alpha
Helix 14
AB5
B
369 374Right-handed alpha
Helix 15
AB6
A
5 9Right-handed 310
Helix 16
AB7
A
10 22Right-handed alpha
Helix 17
AB8
A
22 34Right-handed alpha
Helix 18
AB9
A
50 61Right-handed alpha
Helix 19
AC1
A
98 106Right-handed alpha
Helix 20
AC2
A
147 152Right-handed alpha
Helix 21
AC3
A
175 180Right-handed alpha
Helix 22
AC4
A
187 198Right-handed alpha
Helix 23
AC5
A
213 223Right-handed alpha
Helix 24
AC6
A
235 250Right-handed alpha
Helix 25
AC7
A
260 267Right-handed 310
Helix 26
AC8
A
294 315Right-handed alpha
Helix 27
AC9
A
334 344Right-handed alpha
Helix 28
AD1
A
369 374Right-handed alpha
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There are 8 sheets in PDB entry 5ZVE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
66 67first strand
Strand 2
B
74 78anti-parallel
Strand 3
B
39 44anti-parallel
Strand 4
B
183 185anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
111 112first strand
Strand 2
B
158 165anti-parallel
Strand 3
B
138 144anti-parallel
Strand 4
B
128 132anti-parallel
Strand 5
B
94 97parallel
Strand 6
B
116 119anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
254 258first strand
Strand 2
B
229 233parallel
Strand 3
B
205 207parallel
Strand 4
B
271 277parallel
Strand 5
B
316 326parallel
Strand 6
B
378 385anti-parallel
Strand 7
B
346 348anti-parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
254 258first strand
Strand 2
B
229 233parallel
Strand 3
B
205 207parallel
Strand 4
B
271 277parallel
Strand 5
B
316 326parallel
Strand 6
B
378 385anti-parallel
Strand 7
B
362 368anti-parallel
Strand 8
B
357 359anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 67first strand
Strand 2
A
74 78anti-parallel
Strand 3
A
39 44anti-parallel
Strand 4
A
183 185anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
111 112first strand
Strand 2
A
158 165anti-parallel
Strand 3
A
138 144anti-parallel
Strand 4
A
128 132anti-parallel
Strand 5
A
94 97parallel
Strand 6
A
116 119anti-parallel
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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
254 258first strand
Strand 2
A
229 233parallel
Strand 3
A
205 207parallel
Strand 4
A
271 277parallel
Strand 5
A
316 326parallel
Strand 6
A
378 385anti-parallel
Strand 7
A
346 348anti-parallel
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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
254 258first strand
Strand 2
A
229 233parallel
Strand 3
A
205 207parallel
Strand 4
A
271 277parallel
Strand 5
A
316 326parallel
Strand 6
A
378 385anti-parallel
Strand 7
A
362 368anti-parallel
Strand 8
A
357 359anti-parallel
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